Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SIC15_RS04080 Genome accession   NZ_CP138917
Coordinates   897679..898740 (+) Length   353 a.a.
NCBI ID   WP_008170799.1    Uniprot ID   G6YPX9
Organism   Marinobacter sp. MIT932201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892679..903740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC15_RS04070 - 893623..894888 (+) 1266 WP_069185147.1 malic enzyme-like NAD(P)-binding protein -
  SIC15_RS04075 - 894955..897483 (-) 2529 WP_412537121.1 penicillin-binding protein 1A -
  SIC15_RS04080 pilM 897679..898740 (+) 1062 WP_008170799.1 pilus assembly protein PilM Machinery gene
  SIC15_RS04085 - 898740..899303 (+) 564 WP_412537122.1 PilN domain-containing protein -
  SIC15_RS04090 - 899303..899914 (+) 612 WP_412537123.1 type 4a pilus biogenesis protein PilO -
  SIC15_RS04095 - 899917..900465 (+) 549 WP_412537124.1 pilus assembly protein PilP -
  SIC15_RS04100 pilQ 900531..902597 (+) 2067 WP_412537125.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37794.84 Da        Isoelectric Point: 4.1452

>NTDB_id=905875 SIC15_RS04080 WP_008170799.1 897679..898740(+) (pilM) [Marinobacter sp. MIT932201]
MFGLGKKSSAVLGVDISSSSVKLLELSKQGDRYKVESYAVEPLPANAVVEKNITDVEAVGEVMKRVASKSRSGVKQVAVA
VSGSAVITKVIQMDGGLNEFEMEDQIALEADQYIPYPLDEVAIDFEVQGPSESNPDQVDVLLAACRKENVDIREDALEIA
SLTTKVVDVEAYALERAYALIEPQLDSQGEELVVAIVDIGATMTTLSVLAGGKTVYTREQIFGGKQLTEEIQRRYGLSLE
EAGLAKKQGGLPDDYESEVLTPFREAVVQQVARALQFFFGASQYNAVDYVVLAGGTASIQGLTEMVEEKTGTPTMVANPF
ADMAVGSRVNASALSNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=905875 SIC15_RS04080 WP_008170799.1 897679..898740(+) (pilM) [Marinobacter sp. MIT932201]
GTGTTTGGATTAGGAAAGAAATCCAGTGCAGTGCTGGGCGTGGATATAAGCTCCAGCTCGGTCAAACTTCTGGAGCTGTC
GAAGCAGGGCGACCGTTATAAGGTCGAGAGCTACGCGGTTGAGCCATTGCCGGCCAATGCCGTGGTGGAAAAGAACATTA
CCGACGTGGAAGCCGTGGGCGAAGTGATGAAGCGCGTGGCTTCCAAGTCCCGTTCCGGCGTAAAGCAGGTAGCAGTTGCG
GTATCAGGTTCGGCGGTAATCACCAAGGTCATCCAGATGGATGGTGGCCTCAACGAATTCGAGATGGAAGATCAGATTGC
CCTCGAGGCCGATCAGTATATTCCATACCCGCTGGATGAAGTGGCCATCGATTTTGAGGTTCAGGGACCTTCCGAAAGTA
ACCCCGACCAGGTAGATGTGCTTCTGGCAGCATGCCGAAAGGAAAATGTCGACATTCGGGAAGATGCACTCGAGATTGCT
TCACTCACCACCAAGGTGGTTGATGTTGAGGCCTATGCCCTTGAGCGCGCCTACGCTTTGATCGAGCCGCAGCTGGACTC
TCAGGGCGAAGAATTGGTGGTGGCGATTGTTGATATCGGCGCCACGATGACCACGCTGAGCGTTTTGGCCGGCGGCAAAA
CCGTTTACACCCGCGAACAGATTTTTGGTGGCAAGCAACTGACCGAGGAAATTCAGCGTCGCTATGGTCTGTCTCTGGAA
GAAGCTGGACTTGCCAAAAAGCAGGGCGGACTGCCCGATGACTACGAATCCGAAGTGCTGACCCCGTTTCGCGAGGCCGT
GGTGCAGCAAGTGGCCCGAGCGCTTCAGTTCTTCTTTGGTGCCAGTCAGTACAATGCAGTCGACTATGTGGTTTTGGCAG
GTGGTACTGCCTCGATTCAGGGCCTGACGGAGATGGTCGAAGAAAAAACGGGAACACCGACTATGGTCGCGAATCCTTTT
GCAGACATGGCGGTCGGGTCACGGGTCAACGCATCGGCACTCAGTAACGATGCGCCGTCTCTGATGATTGCCTGCGGCCT
GGCAATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G6YPX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

54.023

98.584

0.533
  comM Acinetobacter nosocomialis M2

54.023

98.584

0.533
  comM Acinetobacter baylyi ADP1

51.724

98.584

0.51
  pilM Legionella pneumophila strain ERS1305867

46.571

99.15

0.462