Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SE861_RS03100 Genome accession   NZ_CP138371
Coordinates   567766..567954 (+) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   A0AAV3JNT7
Organism   Streptococcus agalactiae strain R31-snf2     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 558980..567724 567766..567954 flank 42
IS/Tn 566810..567310 567766..567954 flank 456


Gene organization within MGE regions


Location: 558980..567954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE861_RS03060 (SE861_03060) - 560359..560520 (-) 162 WP_079262691.1 TM2 domain-containing protein -
  SE861_RS03065 (SE861_03065) - 561263..562540 (+) 1278 WP_000594357.1 ABC transporter permease -
  SE861_RS03070 (SE861_03070) - 562550..563206 (+) 657 WP_000353149.1 ABC transporter ATP-binding protein -
  SE861_RS03075 (SE861_03075) - 563206..564582 (+) 1377 WP_000594356.1 ABC transporter permease -
  SE861_RS03080 (SE861_03080) - 564679..565332 (+) 654 WP_000699093.1 response regulator transcription factor -
  SE861_RS03085 (SE861_03085) - 565329..566648 (+) 1320 WP_000734173.1 HAMP domain-containing sensor histidine kinase -
  SE861_RS03090 (SE861_03090) - 566700..567346 (-) 647 Protein_527 IS3 family transposase -
  SE861_RS03095 (SE861_03095) - 567524..567724 (+) 201 WP_000076708.1 CsbD family protein -
  SE861_RS03100 (SE861_03100) prx 567766..567954 (+) 189 WP_000027835.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=902446 SE861_RS03100 WP_000027835.1 567766..567954(+) (prx) [Streptococcus agalactiae strain R31-snf2]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=902446 SE861_RS03100 WP_000027835.1 567766..567954(+) (prx) [Streptococcus agalactiae strain R31-snf2]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468