Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SE933_RS10300 Genome accession   NZ_CP138370
Coordinates   2024675..2024863 (-) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   A0AAV3JNT7
Organism   Streptococcus agalactiae strain SagR40     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2025298..2034052 2024675..2024863 flank 435
IS/Tn 2025298..2025909 2024675..2024863 flank 435


Gene organization within MGE regions


Location: 2024675..2034052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE933_RS10300 (SE933_10300) prx 2024675..2024863 (-) 189 WP_000027835.1 hypothetical protein Regulator
  SE933_RS10305 (SE933_10305) - 2024905..2025084 (-) 180 WP_000076709.1 CsbD family protein -
  SE933_RS10310 (SE933_10310) - 2025262..2025909 (+) 648 Protein_1961 IS3 family transposase -
  SE933_RS10315 (SE933_10315) - 2025961..2027262 (-) 1302 WP_000734168.1 HAMP domain-containing sensor histidine kinase -
  SE933_RS10320 (SE933_10320) - 2027259..2027912 (-) 654 WP_000699093.1 response regulator transcription factor -
  SE933_RS10325 (SE933_10325) - 2028009..2029384 (-) 1376 Protein_1964 ABC transporter permease -
  SE933_RS10330 (SE933_10330) - 2029384..2030040 (-) 657 WP_000353149.1 ABC transporter ATP-binding protein -
  SE933_RS10335 (SE933_10335) - 2030050..2031327 (-) 1278 WP_000594367.1 ABC transporter permease -
  SE933_RS10340 (SE933_10340) - 2032069..2032230 (+) 162 WP_000508795.1 TM2 domain-containing protein -
  SE933_RS10345 (SE933_10345) - 2032403..2033780 (-) 1378 Protein_1968 IS3 family transposase -
  SE933_RS10350 (SE933_10350) - 2033786..2034052 (+) 267 WP_001872365.1 hypothetical protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=902421 SE933_RS10300 WP_000027835.1 2024675..2024863(-) (prx) [Streptococcus agalactiae strain SagR40]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=902421 SE933_RS10300 WP_000027835.1 2024675..2024863(-) (prx) [Streptococcus agalactiae strain SagR40]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468