NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	SE933_RS05365	Genome accession	NZ_CP138370
Coordinates	996178..996768 (+)	Length	196 a.a.
NCBI ID	WP_000613483.1	Uniprot ID	A0AAV3JHA0
Organism	Streptococcus agalactiae strain SagR40
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 991178..1001768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE933_RS05345 (SE933_05345)	-	992600..993148 (+)	549	WP_001019793.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-
SE933_RS05355 (SE933_05355)	-	994145..995314 (+)	1170	WP_000634087.1	MalY/PatB family protein	-
SE933_RS05360 (SE933_05360)	upp	995424..996053 (+)	630	WP_000514490.1	uracil phosphoribosyltransferase	-
SE933_RS05365 (SE933_05365)	clpP	996178..996768 (+)	591	WP_000613483.1	ATP-dependent Clp protease proteolytic subunit	Regulator
SE933_RS05370 (SE933_05370)	-	996868..997113 (+)	246	WP_001041186.1	DUF2129 domain-containing protein	-
SE933_RS05375 (SE933_05375)	-	997268..998434 (+)	1167	WP_000415515.1	ABC transporter substrate-binding protein	-
SE933_RS05380 (SE933_05380)	-	998540..999409 (+)	870	WP_000941400.1	branched-chain amino acid ABC transporter permease	-
SE933_RS05385 (SE933_05385)	-	999412..1000365 (+)	954	WP_000662323.1	branched-chain amino acid ABC transporter permease	-
SE933_RS05390 (SE933_05390)	-	1000366..1001130 (+)	765	WP_001185981.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21550.52 Da Isoelectric Point: 4.5933

                                >NTDB_id=902402 SE933_RS05365 WP_000613483.1 996178..996768(+) (clpP) [Streptococcus agalactiae strain SagR40]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQ

SIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ

Nucleotide

Download Length: 591 bp

                                >NTDB_id=902402 SE933_RS05365 WP_000613483.1 996178..996768(+) (clpP) [Streptococcus agalactiae strain SagR40]

ATGATTCCAGTAGTTATTGAACAAACAAGTCGTGGTGAACGTTCTTATGATATTTACTCACGTCTTTTAAAAGATCGTAT

TATTATGTTGACAGGCCAAGTTGAGGATAATATGGCCAATAGTATCATTGCACAGTTATTGTTTCTCGATGCACAAGATA

ATACAAAGGATATTTACCTTTATGTCAATACACCAGGTGGTTCAGTATCGGCTGGACTTGCTATTGTGGACACCATGAAC

TTCATTAAATCGGACGTACAGACGATTGTTATGGGGATGGCTGCTTCGATGGGAACCATTATTGCTTCAAGTGGTGCTAA

AGGAAAACGTTTTATGTTACCGAATGCAGAATATATGATCCACCAACCAATGGGCGGAACAGGCGGAGGTACACAGCAAT

CTGATATGGCTATCGCTGCTGAGCATCTTTTAAAAACGCGTCATACTTTAGAAAAAATCTTAGCTGATAATTCTGGTCAA

TCTATTGAAAAAGTCCATGATGATGCAGAGCGTGATCGTTGGATGAGTGCTCAAGAAACACTTGATTATGGCTTTATTGA

TGCTATTATGGAAAATAATAATTTACAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus thermophilus LMG 18311	92.347	100	0.923
clpP	Streptococcus thermophilus LMD-9	92.347	100	0.923
clpP	Streptococcus pneumoniae Rx1	92.308	99.49	0.918
clpP	Streptococcus pneumoniae D39	92.308	99.49	0.918
clpP	Streptococcus pneumoniae R6	92.308	99.49	0.918
clpP	Streptococcus pneumoniae TIGR4	92.308	99.49	0.918
clpP	Streptococcus pyogenes JRS4	89.286	100	0.893
clpP	Streptococcus pyogenes MGAS315	89.286	100	0.893
clpP	Streptococcus mutans UA159	88.776	100	0.888
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.204	100	0.852
clpP	Lactococcus lactis subsp. cremoris KW2	84.694	100	0.847
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	96.939	0.561

Detailed information NTG0902402