Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SD207_RS01445 Genome accession   NZ_CP138324
Coordinates   306147..308273 (+) Length   708 a.a.
NCBI ID   WP_002048104.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301147..313273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01425 (SD207_01425) pilM 303110..304168 (+) 1059 WP_031951026.1 pilus assembly protein PilM Machinery gene
  SD207_RS01430 (SD207_01430) pilN 304168..304809 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  SD207_RS01435 (SD207_01435) pilO 304806..305546 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  SD207_RS01440 (SD207_01440) pilP 305557..306084 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  SD207_RS01445 (SD207_01445) pilQ 306147..308273 (+) 2127 WP_002048104.1 type IV pilus secretin PilQ Machinery gene
  SD207_RS01450 (SD207_01450) aroK 308285..308854 (+) 570 WP_000643712.1 shikimate kinase AroK -
  SD207_RS01455 (SD207_01455) aroB 308883..309965 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  SD207_RS01460 (SD207_01460) - 309981..310856 (+) 876 WP_000218807.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76596.16 Da        Isoelectric Point: 7.3160

>NTDB_id=901748 SD207_RS01445 WP_002048104.1 306147..308273(+) (pilQ) [Acinetobacter baumannii strain JBAB]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKSPPDKSASSSYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRMSYAKAVDVLKLIEDSRDAKGAAANRTANSDALALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTKNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=901748 SD207_RS01445 WP_002048104.1 306147..308273(+) (pilQ) [Acinetobacter baumannii strain JBAB]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATACTTGATTTTGATAAGGCTCAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCAAGTTCTGTAGATGTTACTTCAGATGACCAGCGTTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTCGAAGGTAATACCTTTATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCTCAACCACAAGGTGTTTCAAATATTGGCTTTCAACGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCACGTCGCTTAAATGTAAATGATTTTGCAACCCCGGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGCTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACGATC
AGTTTAAAAAGCCCACCAGATAAAAGTGCATCATCTTCATATAAGGCACCAAGTTATTCAGGGAATAAACTTTCCTTAGA
CTTCCAGGATATTGAAGTTCGTAGGGTTCTGCAGTTACTGGCTGATTTTACAGGCATTAATATGGTAGCTGCTGATAGTG
TACAAGGTAATATCACATTACGTTTAAAAGATGTGCCTTGGGATCAGGCCCTTGATATTATTTTAAAAACTAAAAATCTC
GATAAACGACGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATTAAAGCTGAGGATGATCAGGCAAAAGC
TTTGGCGCAAACTATTAAGTTGGCACCGATACAAACAGATTATATTCGGATGAGTTATGCAAAAGCAGTTGATGTGCTTA
AGTTAATCGAAGATTCTCGTGATGCAAAAGGGGCGGCCGCAAACCGTACCGCTAATTCAGATGCTCTTGCTTTAGAGAGT
TTGCTGAGCTCTCGTGGTAGTGCGGTTGCTGACACACGTACCAATACCTTAATTGTAAATGATACGGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAGTTGCTTGATGTGCAAGTTAAACAGGTCATGGTTGAGGCACGTATTGTGAGAGCTTCTA
CGTCATTTACGAAAGAGCTTGGGGTGAAGTGGGGTATTCTTTCACAAGGTATTACCAATAATAAAAACTTATTGGTTGGC
GGGAGTGAAACAACCTTATGGAATTTACGTGAGCCGAAGAAAGATGAAACTACGGGAGGCTATAAATATACGATTGAGCG
TCCAGATAACTTAAACGTGGATTTAGGGGTCACTAATCCCGCAGGAAGTATCGCTTTCGGCTTAATTAGTATGTCTGACT
TTATGTTGGATCTTGAATTGTCTGCTTTACAAGCCGATGGTTATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCC
GATAAACAAACTGCGAAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACCACTTCTGGTGCTGGATCTACAGC
AACGACATCATTTAAAGATGCACTCTTAAGTCTTGATGTGACCCCGAGTATTACACCTGATGGCAAAATTCAAATGAAGT
TGGATATTTCTAAGGACTCTATAGCAGGTGAAGCGCCTAATGGTGAGTTGATTCTGAATAAGAATAATATCAATACCAAT
GTATTGGTAGATAATGGGGAAACTGTCATTTTAGGTGGAGTATTTGAGCAGACAACAAAGAATTCACAAACCAAAGTTCC
TTTCTTTGGTGATATTCCTGTCGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTT
TCGTTACACCACGAATTGTTAATGACACTTTAGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

89.32

100

0.91
  pilQ Acinetobacter baumannii strain A118

89.182

100

0.908
  comQ Acinetobacter baylyi ADP1

72.829

100

0.734
  pilQ Pseudomonas aeruginosa PAK

39.489

99.435

0.393