Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SD207_RS01430 Genome accession   NZ_CP138324
Coordinates   304168..304809 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299168..309809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01410 (SD207_01410) - 299216..299548 (+) 333 WP_000169597.1 hypothetical protein -
  SD207_RS01415 (SD207_01415) - 299551..300375 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  SD207_RS01420 (SD207_01420) ponA 300393..302948 (-) 2556 WP_025467908.1 penicillin-binding protein PBP1a -
  SD207_RS01425 (SD207_01425) pilM 303110..304168 (+) 1059 WP_031951026.1 pilus assembly protein PilM Machinery gene
  SD207_RS01430 (SD207_01430) pilN 304168..304809 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  SD207_RS01435 (SD207_01435) pilO 304806..305546 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  SD207_RS01440 (SD207_01440) pilP 305557..306084 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  SD207_RS01445 (SD207_01445) pilQ 306147..308273 (+) 2127 WP_002048104.1 type IV pilus secretin PilQ Machinery gene
  SD207_RS01450 (SD207_01450) aroK 308285..308854 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=901745 SD207_RS01430 WP_000201226.1 304168..304809(+) (pilN) [Acinetobacter baumannii strain JBAB]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=901745 SD207_RS01430 WP_000201226.1 304168..304809(+) (pilN) [Acinetobacter baumannii strain JBAB]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACTTTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGTGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709