Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SD207_RS01435 Genome accession   NZ_CP138324
Coordinates   304806..305546 (+) Length   246 a.a.
NCBI ID   WP_002048088.1    Uniprot ID   A0A009QGI0
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299806..310546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01420 (SD207_01420) ponA 300393..302948 (-) 2556 WP_025467908.1 penicillin-binding protein PBP1a -
  SD207_RS01425 (SD207_01425) pilM 303110..304168 (+) 1059 WP_031951026.1 pilus assembly protein PilM Machinery gene
  SD207_RS01430 (SD207_01430) pilN 304168..304809 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  SD207_RS01435 (SD207_01435) pilO 304806..305546 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  SD207_RS01440 (SD207_01440) pilP 305557..306084 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  SD207_RS01445 (SD207_01445) pilQ 306147..308273 (+) 2127 WP_002048104.1 type IV pilus secretin PilQ Machinery gene
  SD207_RS01450 (SD207_01450) aroK 308285..308854 (+) 570 WP_000643712.1 shikimate kinase AroK -
  SD207_RS01455 (SD207_01455) aroB 308883..309965 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27861.64 Da        Isoelectric Point: 4.7234

>NTDB_id=901746 SD207_RS01435 WP_002048088.1 304806..305546(+) (pilO) [Acinetobacter baumannii strain JBAB]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQMGNPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=901746 SD207_RS01435 WP_002048088.1 304806..305546(+) (pilO) [Acinetobacter baumannii strain JBAB]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGCTTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATATCGATACGTAGGGGCAACAGATACATCGGAGCAGATGGGCAACCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QGI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

98.78

100

0.988
  comO Acinetobacter baylyi ADP1

69.136

98.78

0.683