Detailed information NTG0901058

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: SA286_RS16820
• Genome accession: NZ_CP137888
• Coordinates: 3248729..3249415 (-)
• Length: 228 a.a.
• NCBI ID: WP_324657589.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain ECC22
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3243729..3254415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA286_RS16785 (SA286_16785)	fliW	3243865..3244299 (-)	435	WP_025208061.1	flagellar assembly protein FliW	-
SA286_RS16790 (SA286_16790)	-	3244328..3244906 (-)	579	WP_041091473.1	DUF6470 family protein	-
SA286_RS16795 (SA286_16795)	flgL	3244953..3245864 (-)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
SA286_RS16800 (SA286_16800)	flgK	3245873..3247393 (-)	1521	WP_024719239.1	flagellar hook-associated protein FlgK	-
SA286_RS16805 (SA286_16805)	-	3247409..3247891 (-)	483	WP_007499977.1	flagellar protein FlgN	-
SA286_RS16810 (SA286_16810)	flgM	3247910..3248173 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
SA286_RS16815 (SA286_16815)	-	3248253..3248672 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
SA286_RS16820 (SA286_16820)	comFC	3248729..3249415 (-)	687	WP_324657589.1	ComF family protein	Machinery gene
SA286_RS16825 (SA286_16825)	-	3249412..3249705 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
SA286_RS16830 (SA286_16830)	comFA	3249770..3251149 (-)	1380	WP_411161834.1	DEAD/DEAH box helicase	Machinery gene
SA286_RS16835 (SA286_16835)	-	3251269..3252111 (-)	843	WP_024719242.1	DegV family protein	-
SA286_RS16840 (SA286_16840)	degU	3252323..3253012 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
SA286_RS16845 (SA286_16845)	degS	3253077..3254252 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26143.69 Da
• Isoelectric Point: 10.3239

>NTDB_id=901058 SA286_RS16820 WP_324657589.1 3248729..3249415(-) (comFC) [Bacillus altitudinis strain ECC22]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDRLCQDCSRWNKRRDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=901058 SA286_RS16820 WP_324657589.1 3248729..3249415(-) (comFC) [Bacillus altitudinis strain ECC22]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
GATTGTGTCAGGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus mitis SK321	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373