Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SA286_RS16830 Genome accession   NZ_CP137888
Coordinates   3249770..3251149 (-) Length   459 a.a.
NCBI ID   WP_411161834.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ECC22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3244770..3256149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA286_RS16795 (SA286_16795) flgL 3244953..3245864 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  SA286_RS16800 (SA286_16800) flgK 3245873..3247393 (-) 1521 WP_024719239.1 flagellar hook-associated protein FlgK -
  SA286_RS16805 (SA286_16805) - 3247409..3247891 (-) 483 WP_007499977.1 flagellar protein FlgN -
  SA286_RS16810 (SA286_16810) flgM 3247910..3248173 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  SA286_RS16815 (SA286_16815) - 3248253..3248672 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  SA286_RS16820 (SA286_16820) comFC 3248729..3249415 (-) 687 WP_324657589.1 ComF family protein Machinery gene
  SA286_RS16825 (SA286_16825) - 3249412..3249705 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  SA286_RS16830 (SA286_16830) comFA 3249770..3251149 (-) 1380 WP_411161834.1 DEAD/DEAH box helicase Machinery gene
  SA286_RS16835 (SA286_16835) - 3251269..3252111 (-) 843 WP_024719242.1 DegV family protein -
  SA286_RS16840 (SA286_16840) degU 3252323..3253012 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  SA286_RS16845 (SA286_16845) degS 3253077..3254252 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  SA286_RS16850 (SA286_16850) - 3254474..3255142 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52461.03 Da        Isoelectric Point: 10.0232

>NTDB_id=901059 SA286_RS16830 WP_411161834.1 3249770..3251149(-) (comFA) [Bacillus altitudinis strain ECC22]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRLASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPVFSESALVQISGRAGRHSNFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=901059 SA286_RS16830 WP_411161834.1 3249770..3251149(-) (comFA) [Bacillus altitudinis strain ECC22]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGTTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCATCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTGGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTACCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTGTTTTTTCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATTCAAATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505