Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   R6U80_RS05670 Genome accession   NZ_CP137623
Coordinates   1142527..1142877 (-) Length   116 a.a.
NCBI ID   WP_313792063.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1137527..1147877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS05640 (R6U80_05640) - 1137637..1139169 (+) 1533 WP_098396806.1 Nramp family divalent metal transporter -
  R6U80_RS05645 (R6U80_05645) - 1139271..1140239 (+) 969 WP_081041168.1 PhoH family protein -
  R6U80_RS05650 (R6U80_05650) - 1140297..1140776 (+) 480 WP_003130650.1 NUDIX hydrolase -
  R6U80_RS05655 (R6U80_05655) ybeY 1140928..1141416 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  R6U80_RS05660 (R6U80_05660) - 1141400..1141855 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  R6U80_RS05665 (R6U80_05665) - 1141869..1142447 (+) 579 WP_313792064.1 nucleotidyltransferase family protein -
  R6U80_RS05670 (R6U80_05670) comFC 1142527..1142877 (-) 351 WP_313792063.1 hypothetical protein Machinery gene
  R6U80_RS05675 (R6U80_05675) comFA 1143120..1144442 (-) 1323 WP_023189341.1 DEAD/DEAH box helicase Machinery gene
  R6U80_RS05680 (R6U80_05680) - 1144499..1145128 (+) 630 WP_201247956.1 YigZ family protein -
  R6U80_RS05685 (R6U80_05685) - 1145262..1145759 (+) 498 WP_023189340.1 VanZ family protein -
  R6U80_RS05690 (R6U80_05690) - 1145807..1146826 (+) 1020 WP_313792062.1 DUF475 domain-containing protein -
  R6U80_RS05695 (R6U80_05695) - 1146941..1147687 (+) 747 WP_058223057.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13725.88 Da        Isoelectric Point: 10.0141

>NTDB_id=899394 R6U80_RS05670 WP_313792063.1 1142527..1142877(-) (comFC) [Lactococcus lactis strain NCK401]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHKF

Nucleotide


Download         Length: 351 bp        

>NTDB_id=899394 R6U80_RS05670 WP_313792063.1 1142527..1142877(-) (comFC) [Lactococcus lactis strain NCK401]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACAAATTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

69.298

98.276

0.681
  comFC/cflB Streptococcus mitis SK321

47.863

100

0.483
  comFC/cflB Streptococcus mitis NCTC 12261

47.863

100

0.483
  comFC/cflB Streptococcus pneumoniae R6

45.299

100

0.457
  comFC/cflB Streptococcus pneumoniae Rx1

45.299

100

0.457
  comFC/cflB Streptococcus pneumoniae TIGR4

45.299

100

0.457
  comFC/cflB Streptococcus pneumoniae D39

45.299

100

0.457
  comFC Bacillus subtilis subsp. subtilis str. 168

39.344

100

0.414
  comFC Latilactobacillus sakei subsp. sakei 23K

38.843

100

0.405