Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   ABD406_RS05200 Genome accession   NZ_CP155738
Coordinates   1021238..1021426 (-) Length   62 a.a.
NCBI ID   WP_032461628.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1510/08     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016238..1026426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD406_RS05175 (ABD406_05150) - 1018042..1018413 (+) 372 WP_002989617.1 GntR family transcriptional regulator -
  ABD406_RS05180 (ABD406_05155) - 1018413..1019111 (+) 699 WP_002984437.1 ABC transporter ATP-binding protein -
  ABD406_RS05185 (ABD406_05160) - 1019121..1019906 (+) 786 WP_002984433.1 hypothetical protein -
  ABD406_RS05190 (ABD406_05165) - 1020033..1020647 (-) 615 WP_023612208.1 TVP38/TMEM64 family protein -
  ABD406_RS05200 (ABD406_05175) prx 1021238..1021426 (-) 189 WP_032461628.1 hypothetical protein Regulator
  ABD406_RS05205 (ABD406_05180) mf2 1021666..1022424 (+) 759 WP_011184727.1 DNase Mf2 -
  ABD406_RS05210 (ABD406_05185) speC 1022535..1023242 (+) 708 WP_021733756.1 streptococcal pyrogenic exotoxin SpeC -
  ABD406_RS05215 (ABD406_05190) - 1023311..1024063 (-) 753 WP_023611694.1 CHAP domain-containing protein -
  ABD406_RS05220 (ABD406_05195) - 1024065..1024397 (-) 333 WP_021733507.1 phage holin -
  ABD406_RS05225 (ABD406_05200) - 1024410..1024730 (-) 321 WP_021733504.1 hypothetical protein -
  ABD406_RS05230 (ABD406_05205) - 1024741..1025352 (-) 612 WP_032461629.1 DUF1366 domain-containing protein -
  ABD406_RS05235 (ABD406_05210) - 1025355..1025786 (-) 432 WP_002987513.1 DUF1617 family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7312.35 Da        Isoelectric Point: 4.1813

>NTDB_id=898433 ABD406_RS05200 WP_032461628.1 1021238..1021426(-) (prx) [Streptococcus pyogenes strain 1510/08]
MLTYDEFKQAIDNGYITADTVMIVRKNEQIFDYVLPHEKVKNGEVVTEEKVEEVMVELDYIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=898433 ABD406_RS05200 WP_032461628.1 1021238..1021426(-) (prx) [Streptococcus pyogenes strain 1510/08]
ATGCTAACATACGACGAATTTAAACAAGCAATTGACAATGGATATATCACAGCAGACACAGTAATGATCGTGCGCAAGAA
CGAACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACCGAGGAGAAGGTGGAAGAAG
TGATGGTGGAATTAGACTATATCAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

88.71

100

0.887
  prx Streptococcus pyogenes MGAS8232

87.931

93.548

0.823
  prx Streptococcus pyogenes MGAS315

87.931

93.548

0.823
  prx Streptococcus pyogenes MGAS315

81.356

95.161

0.774
  prx Streptococcus pyogenes MGAS315

79.661

95.161

0.758
  prx Streptococcus pyogenes MGAS315

85.366

66.129

0.565
  prx Streptococcus pyogenes MGAS315

73.81

67.742

0.5