Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   ABD406_RS03195 Genome accession   NZ_CP155738
Coordinates   594020..594199 (+) Length   59 a.a.
NCBI ID   WP_030127450.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1510/08     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 589020..599199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD406_RS03165 (ABD406_03150) - 589796..590224 (+) 429 WP_002988448.1 DUF1617 family protein -
  ABD406_RS03170 (ABD406_03155) - 590227..590859 (+) 633 WP_011054443.1 hypothetical protein -
  ABD406_RS03175 (ABD406_03160) - 590871..591143 (+) 273 WP_011017397.1 hypothetical protein -
  ABD406_RS03180 (ABD406_03165) - 591140..591367 (+) 228 WP_011054444.1 phage holin -
  ABD406_RS03185 (ABD406_03170) - 591483..592691 (+) 1209 WP_011054445.1 glucosaminidase domain-containing protein -
  ABD406_RS03190 (ABD406_03175) - 592801..593787 (-) 987 WP_050440680.1 DNA/RNA non-specific endonuclease -
  ABD406_RS03195 (ABD406_03180) prx 594020..594199 (+) 180 WP_030127450.1 hypothetical protein Regulator
  ABD406_RS03200 (ABD406_03185) - 594380..594700 (-) 321 Protein_581 site-specific integrase -
  ABD406_RS03205 (ABD406_03190) - 595054..595614 (+) 561 WP_023612339.1 HAD-IA family hydrolase -
  ABD406_RS03210 (ABD406_03195) gyrB 595615..597567 (+) 1953 WP_038431254.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6979.01 Da        Isoelectric Point: 3.8662

>NTDB_id=898417 ABD406_RS03195 WP_030127450.1 594020..594199(+) (prx) [Streptococcus pyogenes strain 1510/08]
MLTYDEFKQAIDDGYITTDAVMIVRKNGQIFDYVLPGEEVRPWEIVIEERVAEVLMELW

Nucleotide


Download         Length: 180 bp        

>NTDB_id=898417 ABD406_RS03195 WP_030127450.1 594020..594199(+) (prx) [Streptococcus pyogenes strain 1510/08]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGATGACGGCTATATCACAACAGACGCAGTAATGATCGTGCGCAAGAA
CGGACAAATTTTTGATTATGTCTTGCCAGGAGAGGAAGTCAGGCCATGGGAGATTGTGATCGAGGAGAGGGTGGCGGAGG
TGTTGATGGAATTGTGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

81.034

98.305

0.797
  prx Streptococcus pyogenes MGAS315

77.586

98.305

0.763
  prx Streptococcus pyogenes MGAS315

75.862

98.305

0.746
  prx Streptococcus pyogenes MGAS8232

70.69

98.305

0.695
  prx Streptococcus pyogenes MGAS315

87.805

69.492

0.61
  prx Streptococcus pyogenes MGAS315

85.714

71.186

0.61
  prx Streptococcus pyogenes MGAS315

73.171

69.492

0.508