Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ABD412_RS01520 Genome accession   NZ_CP155737
Coordinates   282326..282877 (+) Length   183 a.a.
NCBI ID   WP_369303556.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 9606/11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 277326..287877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD412_RS01520 (ABD412_01505) comX/sigX/comX2/sigX2 282326..282877 (+) 552 WP_369303556.1 sigma-70 family RNA polymerase sigma factor Regulator
  ABD412_RS01525 (ABD412_01510) - 283458..283985 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  ABD412_RS01530 (ABD412_01515) yqeH 283985..285103 (+) 1119 WP_023612142.1 ribosome biogenesis GTPase YqeH -
  ABD412_RS01535 (ABD412_01520) yhbY 285128..285436 (+) 309 WP_023612138.1 ribosome assembly RNA-binding protein YhbY -
  ABD412_RS01540 (ABD412_01525) - 285505..286137 (+) 633 WP_011184179.1 nicotinate-nucleotide adenylyltransferase -
  ABD412_RS01545 (ABD412_01530) yqeK 286134..286727 (+) 594 WP_023612141.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABD412_RS01550 (ABD412_01535) rsfS 286751..287104 (+) 354 WP_032465567.1 ribosome silencing factor -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22298.17 Da        Isoelectric Point: 10.1972

>NTDB_id=898306 ABD412_RS01520 WP_369303556.1 282326..282877(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 9606/11]
MSCCFFVVLFILGMVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLKRYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=898306 ABD412_RS01520 WP_369303556.1 282326..282877(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 9606/11]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATGGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAAAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.