Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   R4706_RS09940 Genome accession   NZ_CP137111
Coordinates   1949809..1950459 (+) Length   216 a.a.
NCBI ID   WP_000387330.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 17023     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944809..1955459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4706_RS09910 - 1945293..1945508 (+) 216 WP_001232082.1 YozE family protein -
  R4706_RS09915 - 1945594..1946562 (+) 969 WP_000658183.1 PhoH family protein -
  R4706_RS09920 - 1946755..1947255 (+) 501 WP_050205779.1 GNAT family N-acetyltransferase -
  R4706_RS09925 - 1947258..1947583 (+) 326 Protein_1912 TfoX/Sxy family protein -
  R4706_RS09930 ald 1947884..1948995 (-) 1112 Protein_1913 alanine dehydrogenase -
  R4706_RS09935 - 1949172..1949741 (+) 570 WP_000443773.1 GNAT family N-acetyltransferase -
  R4706_RS09940 comEA/celA/cilE 1949809..1950459 (+) 651 WP_000387330.1 ComEA family DNA-binding protein Machinery gene
  R4706_RS09945 comEC/celB 1950443..1952683 (+) 2241 WP_044727637.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R4706_RS09950 - 1952862..1953050 (+) 189 WP_001809102.1 hypothetical protein -
  R4706_RS09955 - 1953082..1953669 (+) 588 WP_000933542.1 ATP-binding cassette domain-containing protein -
  R4706_RS09960 - 1953673..1954854 (+) 1182 WP_000655952.1 membrane protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23229.65 Da        Isoelectric Point: 5.5171

>NTDB_id=895989 R4706_RS09940 WP_000387330.1 1949809..1950459(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain 17023]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGLGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=895989 R4706_RS09940 WP_000387330.1 1949809..1950459(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain 17023]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAAAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGCCAACAGACTGGTTTGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(151-214)

SLBB domain (SLBB)

(76-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.