Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   R4706_RS02925 Genome accession   NZ_CP137111
Coordinates   589058..589222 (+) Length   54 a.a.
NCBI ID   WP_306420852.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 17023     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 584058..594222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4706_RS02905 - 586060..586263 (-) 204 WP_000411016.1 hypothetical protein -
  R4706_RS02910 - 586581..586784 (-) 204 WP_001093262.1 bacteriocin class II family protein -
  R4706_RS02915 comA/nlmT 587066..587653 (+) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  R4706_RS02920 blpA 587580..588848 (+) 1269 Protein_579 peptide cleavage/export ABC transporter BlpA -
  R4706_RS02925 comA/nlmT 589058..589222 (+) 165 WP_306420852.1 hypothetical protein Regulator
  R4706_RS02930 - 589233..590594 (+) 1362 WP_050233594.1 bacteriocin secretion accessory protein -
  R4706_RS02935 blpC 590651..590779 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R4706_RS02940 - 590850..592190 (-) 1341 WP_001017646.1 sensor histidine kinase -
  R4706_RS02945 comE/blpR 592204..592941 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R4706_RS02950 - 592946..593284 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  R4706_RS02955 - 593560..593889 (+) 330 WP_000132572.1 hypothetical protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6235.24 Da        Isoelectric Point: 8.7682

>NTDB_id=895927 R4706_RS02925 WP_306420852.1 589058..589222(+) (comA/nlmT) [Streptococcus pneumoniae strain 17023]
MSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 165 bp        

>NTDB_id=895927 R4706_RS02925 WP_306420852.1 589058..589222(+) (comA/nlmT) [Streptococcus pneumoniae strain 17023]
ATGTCCCTAACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACTAACCGTGTCATTGTTCT
TGACCAGGGGAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAAGCGCAAGGATTCTACCATCATCTATTCAATA
AATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

64.151

98.148

0.63
  comA Streptococcus gordonii str. Challis substr. CH1

67.347

90.741

0.611
  comA Streptococcus mitis NCTC 12261

63.265

90.741

0.574
  comA Streptococcus pneumoniae TIGR4

63.265

90.741

0.574
  comA Streptococcus pneumoniae Rx1

63.265

90.741

0.574
  comA Streptococcus pneumoniae D39

63.265

90.741

0.574
  comA Streptococcus pneumoniae R6

63.265

90.741

0.574
  comA Streptococcus mitis SK321

61.224

90.741

0.556
  rcrQ Streptococcus mutans UA159

43.75

88.889

0.389