Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9Y83_RS04165 Genome accession   NZ_CP155048
Coordinates   846078..846575 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain CCBH26428     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 841078..851575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9Y83_RS04150 (M9Y83_0004150) bfr 841086..841550 (+) 465 WP_003093668.1 bacterioferritin -
  M9Y83_RS04155 (M9Y83_0004155) uvrA 841622..844459 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  M9Y83_RS04160 (M9Y83_0004160) - 844673..846061 (+) 1389 WP_009316331.1 MFS transporter -
  M9Y83_RS04165 (M9Y83_0004165) ssb 846078..846575 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  M9Y83_RS04170 (M9Y83_0004170) - 846706..847326 (+) 621 WP_342399250.1 hypothetical protein -
  M9Y83_RS04180 (M9Y83_0004180) - 849262..849579 (+) 318 WP_058157981.1 hypothetical protein -
  M9Y83_RS04185 (M9Y83_0004185) - 849600..850814 (+) 1215 WP_058157982.1 PfkB family carbohydrate kinase -
  M9Y83_RS04190 (M9Y83_0004190) - 850811..851416 (+) 606 WP_128662105.1 7-cyano-7-deazaguanine synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=895368 M9Y83_RS04165 WP_003114685.1 846078..846575(+) (ssb) [Pseudomonas aeruginosa strain CCBH26428]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=895368 M9Y83_RS04165 WP_003114685.1 846078..846575(+) (ssb) [Pseudomonas aeruginosa strain CCBH26428]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515