Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   AAH980_RS10335 Genome accession   NZ_CP154856
Coordinates   2194332..2198516 (-) Length   1394 a.a.
NCBI ID   WP_284080507.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2189332..2203516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS10300 (AAH980_10300) - 2190070..2191011 (+) 942 WP_079377864.1 triacylglycerol lipase -
  AAH980_RS10305 (AAH980_10305) rplS 2191063..2191431 (-) 369 WP_002051668.1 50S ribosomal protein L19 -
  AAH980_RS10310 (AAH980_10310) trmD 2191647..2192402 (-) 756 WP_002051760.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AAH980_RS10315 (AAH980_10315) rimM 2192449..2192997 (-) 549 WP_004711694.1 ribosome maturation factor RimM -
  AAH980_RS10320 (AAH980_10320) rpsP 2193017..2193268 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  AAH980_RS10325 (AAH980_10325) pilE 2193415..2193840 (-) 426 WP_017392607.1 type IV pilin protein Machinery gene
  AAH980_RS10330 (AAH980_10330) pilY2 2193837..2194319 (-) 483 WP_284080506.1 type IV pilin protein Machinery gene
  AAH980_RS10335 (AAH980_10335) pilY1 2194332..2198516 (-) 4185 WP_284080507.1 PilC/PilY family type IV pilus protein Machinery gene
  AAH980_RS10340 (AAH980_10340) pilX 2198516..2199331 (-) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAH980_RS10345 (AAH980_10345) pilW 2199328..2200326 (-) 999 WP_017392604.1 PilW family protein Machinery gene
  AAH980_RS10350 (AAH980_10350) pilV 2200326..2200886 (-) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  AAH980_RS10355 (AAH980_10355) fimU 2200880..2201353 (-) 474 WP_016803890.1 GspH/FimT family pseudopilin Machinery gene
  AAH980_RS10360 (AAH980_10360) ispH 2201522..2202472 (-) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAH980_RS10365 (AAH980_10365) gmk 2202595..2203224 (+) 630 WP_002051739.1 guanylate kinase -

Sequence

Protein


Download         Length: 1394 a.a.        Molecular weight: 149198.19 Da        Isoelectric Point: 7.3912

>NTDB_id=893616 AAH980_RS10335 WP_284080507.1 2194332..2198516(-) (pilY1) [Acinetobacter nosocomialis strain Ab25]
MGNIMKLHFKPNKLWYAIYSTSMTFTWLMSSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMGRTIQSGYSIYDDYGITS
CSTTYVNSTTTPSYRRYYCGVSSNTTNSKVTNLATGCEKQADNSYRCYDRLTRLKDGMFSFLENNNPIFNNVSVGLGHFS
TYSSGTTGDGSSGEILVPAANLGVVGSAQRVALKNAVAGLEASGGTPTANAYAEAAAYLMGTRTLSSTTANVAMYFKYYP
VLTQTSQTVYYACGNNSASGSTDNTKCTYTPTTIPSQSNLSNYSSNTTSSTNGNITTYTTYYYKTTGWFYPTTTYYYKTT
YSETKVTSSTPNYQSCTAYNSNGCTTWSAASLTNPTTDTYDTQCTVNTVAGTCVYQTKTILGTNSYSGFNSSVQSSKDPD
TNYTTYKSPLPPVSQRQSCDGQGVYILSDGEPTNNVNSSVLASALNLSSFSNSGGLSGGTNWDYMSNFAKALFNGGVIQS
DANNATNPANVSIQTAFVGFGSALNALSTTDAKNACKMSSRTQIDRSGDDACSPNQGTNAVSAPGYGNGGFFPTQSAQGV
TDSVIAFINNLGKVPLEPLTTGAISVPYDALNPKNLQEYGYLRAFEPDPANAYLTWRGNLKKYHVVLSGSNAGAFEAKSG
GLVYDANGAFRSGTKDYWNSSSYNDGGKVFLGGAYSNVPLPTLGQPEEVNSQGNITKYYYAAKNKIRNLFTDVSTVATDG
SLTKISTTNTNLLKIPAAPAVNTNPFDTAANTASYVLGKFNSSTGQDVLKAFPVSLKLKLLNYLGYPTDITATALPSTLT
TSNAPYLSMGGSIHSFPVQLTYSGTLDQNGNLTSAREQSILYGSMEGGLHIVDASSGVEQMVFIPADILNDTVASKALVV
GQSDSTAPAQGMDGAWVSDPAYNITTTGSGSSAVSKVTAKQMNIYGGMRMGGSSYYGLNVLNPSSPQLMFRIGADQSDYS
RMGQSWSKPVLANIRYNGAIRRVMIVGGGYDQCYEKPNITLSDSCFSNGKAKGNAVYIIDAKTGERLWWASDTGSNNDNA
NMKHSIVSRISTLDRDGDGLVDHLYFGDLGGQVFRVDLNNNQTQTNSTYSSFGIRVVRLANLATNDTTNDSGNDYTGGNA
PRFYEPPTVTIHDYGVRSFITVGIASGDRSTPLDVYPIIGREGMSPSTALSGRPVNNVYGIIDRDFIKKNLMSLSDSQLE
TKDLIRSNLRKNPQILRAGETSVGQVFFPSTGTGQAGWYRSLSSTSNGTEKADNSFRIKGGMKAFEEPIAITGNLIVPVY
DPQGTGIVASDPCLPRVVGETDRQTYCLPFGVCLNTDGSINHNKEDNSGFGTDGTKNLNVIGSGVRNITFVPSEDNPSPQ
NSCGKLKLSGNEQGTGQWQCTSYLIPARWYERYR

Nucleotide


Download         Length: 4185 bp        

>NTDB_id=893616 AAH980_RS10335 WP_284080507.1 2194332..2198516(-) (pilY1) [Acinetobacter nosocomialis strain Ab25]
ATGGGGAATATCATGAAACTACATTTCAAACCAAATAAATTATGGTATGCCATCTATTCAACTTCGATGACATTTACATG
GCTTATGTCAAGTTCTGTAGTGCAGGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTTA
TGATGCTAGATACTTCTGGATCAATGGGGCGTACGATCCAGTCCGGTTATAGTATTTATGATGATTACGGTATTACAAGT
TGTTCAACTACTTATGTAAACTCAACAACTACTCCTAGTTATCGTCGGTATTATTGCGGGGTTTCCTCAAATACCACTAA
TAGCAAAGTAACTAATTTAGCAACCGGATGTGAGAAACAGGCAGATAATAGTTATCGTTGTTATGACCGGTTAACGCGCC
TAAAAGATGGTATGTTTTCTTTTTTAGAAAATAATAACCCGATATTTAATAATGTAAGTGTTGGATTGGGGCATTTCTCT
ACATACAGTAGTGGTACTACTGGTGATGGCAGTAGCGGCGAAATTTTGGTTCCAGCAGCAAATTTGGGCGTTGTAGGATC
TGCACAAAGAGTTGCATTAAAAAATGCTGTAGCTGGATTAGAAGCAAGTGGAGGAACGCCTACTGCTAATGCTTATGCTG
AGGCAGCAGCTTACTTAATGGGAACACGAACATTAAGCTCGACTACAGCAAATGTGGCAATGTATTTTAAATATTATCCA
GTTTTAACTCAGACGTCACAAACCGTTTACTATGCCTGTGGTAATAATTCAGCTAGTGGTTCAACAGATAATACAAAGTG
TACATATACGCCGACCACAATTCCAAGCCAGTCTAATTTATCTAACTATAGTAGTAATACTACAAGCTCAACAAATGGAA
ATATAACGACTTACACCACTTATTATTATAAAACGACTGGATGGTTTTATCCTACAACGACCTATTACTATAAAACTACT
TATAGTGAAACTAAAGTAACCAGTTCAACACCTAATTATCAAAGCTGTACAGCATATAACTCTAATGGATGTACTACTTG
GAGTGCGGCTTCTTTAACTAATCCAACAACAGATACCTATGATACGCAATGTACAGTTAATACAGTGGCTGGTACATGTG
TCTATCAAACTAAAACAATTTTAGGTACAAACAGTTATAGTGGATTTAATAGCTCCGTTCAAAGTTCAAAAGATCCAGAT
ACCAACTACACTACATATAAATCACCATTACCTCCCGTTAGTCAGCGTCAAAGTTGTGATGGACAAGGGGTTTATATTTT
GTCTGATGGTGAACCAACGAATAACGTAAACTCTTCTGTTTTAGCCTCTGCATTGAACCTTAGCTCGTTTAGTAATAGTG
GTGGACTGAGCGGTGGTACAAACTGGGATTATATGAGTAACTTCGCTAAGGCCTTATTTAATGGCGGGGTAATTCAAAGT
GATGCTAATAATGCTACAAACCCAGCTAATGTATCTATACAAACTGCTTTTGTTGGTTTTGGTTCAGCATTAAATGCCTT
GAGCACTACAGATGCGAAGAACGCTTGTAAAATGAGTTCTCGTACTCAAATAGATAGAAGTGGAGATGATGCATGTTCTC
CAAATCAGGGAACAAATGCTGTATCTGCCCCAGGTTATGGTAATGGTGGATTTTTTCCTACCCAAAGTGCGCAGGGAGTA
ACCGATAGCGTAATTGCATTTATTAATAACTTAGGGAAGGTGCCTTTAGAGCCTCTTACTACTGGTGCGATTTCTGTACC
TTATGATGCATTAAATCCTAAAAACCTACAGGAATATGGTTATTTACGGGCTTTTGAGCCAGATCCGGCAAATGCTTATC
TGACTTGGCGAGGTAACTTAAAAAAATATCATGTGGTTTTATCTGGTTCAAATGCTGGTGCATTTGAAGCGAAGTCTGGT
GGGCTGGTCTATGATGCAAATGGAGCATTCCGTAGTGGTACAAAAGATTATTGGAATAGTTCTAGTTATAATGATGGCGG
AAAAGTTTTCTTAGGAGGAGCCTATAGCAATGTACCATTACCAACTTTAGGTCAGCCAGAAGAGGTAAATTCTCAAGGTA
ATATTACTAAATATTATTATGCTGCAAAAAATAAAATCCGAAATCTGTTTACTGATGTTTCTACCGTGGCTACAGATGGT
AGTTTAACTAAAATATCAACTACAAATACTAACTTACTGAAAATTCCTGCTGCACCTGCTGTAAATACAAATCCTTTTGA
TACAGCGGCTAATACTGCAAGTTATGTGCTAGGAAAATTTAATAGCTCTACGGGACAAGATGTTTTGAAGGCATTTCCTG
TGAGCTTGAAATTAAAATTATTAAATTACTTGGGTTATCCGACAGATATTACGGCGACAGCTCTACCAAGCACATTAACC
ACATCAAATGCCCCTTATTTATCGATGGGCGGGAGTATCCACTCTTTTCCGGTACAGCTGACTTATAGTGGTACTTTAGA
TCAAAATGGAAATTTAACCAGTGCACGTGAGCAATCTATTCTTTACGGAAGTATGGAAGGAGGATTGCATATCGTAGATG
CCTCTTCTGGGGTTGAGCAAATGGTATTTATCCCAGCCGATATATTAAATGATACGGTAGCGTCTAAAGCTTTAGTGGTA
GGGCAAAGTGATTCAACAGCCCCTGCTCAAGGTATGGATGGAGCATGGGTATCGGATCCAGCATATAACATTACCACTAC
AGGTTCAGGTAGTTCAGCAGTATCAAAAGTTACTGCTAAACAAATGAATATTTATGGTGGAATGCGTATGGGGGGCAGTA
GCTATTATGGATTAAATGTATTAAATCCAAGTTCCCCACAATTAATGTTTAGAATAGGTGCAGATCAATCTGACTATAGC
CGTATGGGGCAAAGCTGGTCTAAGCCCGTACTTGCAAATATTCGTTATAACGGTGCGATTAGACGTGTCATGATTGTTGG
TGGTGGTTATGATCAATGCTACGAGAAACCAAATATCACGTTGAGTGACTCATGCTTTAGCAATGGTAAGGCAAAAGGAA
ATGCTGTCTATATTATCGATGCTAAAACCGGAGAGCGTTTATGGTGGGCCAGTGATACAGGTTCCAATAATGATAACGCT
AATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTGGACCGAGATGGTGATGGCTTAGTAGATCATTTGTATTTTGG
CGATTTAGGTGGACAAGTCTTTCGTGTAGATCTTAATAATAATCAGACTCAAACTAACTCGACTTATAGTAGTTTCGGTA
TAAGAGTTGTGAGATTGGCAAATCTGGCAACAAACGATACAACAAATGATAGTGGAAATGATTACACAGGTGGAAATGCC
CCTCGTTTTTATGAGCCGCCTACCGTAACAATTCATGATTATGGTGTTCGCTCATTTATTACGGTTGGTATCGCTTCTGG
TGATCGAAGTACACCACTAGATGTTTATCCAATTATTGGCCGAGAAGGTATGTCTCCTAGTACGGCGCTTAGTGGTCGAC
CTGTAAATAATGTTTATGGAATTATTGATAGAGACTTTATCAAAAAGAATTTAATGTCGTTAAGTGATAGTCAGCTTGAA
ACTAAGGATCTTATTCGCTCAAATCTACGGAAAAACCCACAAATATTAAGAGCAGGCGAAACGAGCGTAGGGCAGGTTTT
CTTTCCAAGTACGGGTACAGGTCAAGCAGGTTGGTACCGATCACTTTCTAGTACGAGCAATGGTACTGAAAAAGCTGATA
ATAGCTTCCGTATTAAAGGGGGAATGAAAGCCTTTGAAGAACCCATAGCAATTACAGGTAATTTAATCGTTCCTGTCTAT
GACCCTCAAGGAACGGGTATTGTTGCGTCAGACCCTTGTTTACCACGTGTAGTAGGTGAAACAGATCGACAAACTTATTG
TCTACCATTTGGAGTGTGTCTGAATACTGATGGATCGATTAATCATAATAAGGAAGATAATAGTGGTTTTGGAACAGATG
GAACAAAGAACCTAAATGTAATTGGTTCAGGGGTTCGCAATATTACGTTTGTGCCTAGTGAAGATAATCCATCTCCGCAA
AACAGTTGTGGAAAATTAAAGCTATCTGGTAATGAGCAAGGAACAGGGCAGTGGCAATGCACAAGCTATTTGATCCCTGC
ACGCTGGTATGAGCGTTATCGCTAA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(823-1083)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

76.4

78.121

0.597