Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   AAH980_RS10330 Genome accession   NZ_CP154856
Coordinates   2193837..2194319 (-) Length   160 a.a.
NCBI ID   WP_284080506.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2188837..2199319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS10295 (AAH980_10295) - 2188921..2189955 (+) 1035 WP_284080505.1 lipase secretion chaperone -
  AAH980_RS10300 (AAH980_10300) - 2190070..2191011 (+) 942 WP_079377864.1 triacylglycerol lipase -
  AAH980_RS10305 (AAH980_10305) rplS 2191063..2191431 (-) 369 WP_002051668.1 50S ribosomal protein L19 -
  AAH980_RS10310 (AAH980_10310) trmD 2191647..2192402 (-) 756 WP_002051760.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AAH980_RS10315 (AAH980_10315) rimM 2192449..2192997 (-) 549 WP_004711694.1 ribosome maturation factor RimM -
  AAH980_RS10320 (AAH980_10320) rpsP 2193017..2193268 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  AAH980_RS10325 (AAH980_10325) pilE 2193415..2193840 (-) 426 WP_017392607.1 type IV pilin protein Machinery gene
  AAH980_RS10330 (AAH980_10330) pilY2 2193837..2194319 (-) 483 WP_284080506.1 type IV pilin protein Machinery gene
  AAH980_RS10335 (AAH980_10335) pilY1 2194332..2198516 (-) 4185 WP_284080507.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17558.81 Da        Isoelectric Point: 9.1549

>NTDB_id=893615 AAH980_RS10330 WP_284080506.1 2193837..2194319(-) (pilY2) [Acinetobacter nosocomialis strain Ab25]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAAKSEILKLAERLEQHKFRNFTYRGFTTTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWVIRATTTDSRNLNFIAKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=893615 AAH980_RS10330 WP_284080506.1 2193837..2194319(-) (pilY2) [Acinetobacter nosocomialis strain Ab25]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGCTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTTTAGAAATTTTACCTATAGGGGATTTACCACAACCTCTGTAACGTTAACT
CGTGGGGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCGAATGGGCAGAC
ATGGGTGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGCTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGAACAACTACATGTAACACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-121)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

83.125

100

0.831
  comE Acinetobacter baylyi ADP1

36.628

100

0.394