Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AAH980_RS07635 Genome accession   NZ_CP154856
Coordinates   1635571..1636959 (+) Length   462 a.a.
NCBI ID   WP_004707421.1    Uniprot ID   A0AA36KAH4
Organism   Acinetobacter nosocomialis strain Ab25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1630571..1641959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS07615 (AAH980_07615) lysA 1630632..1631882 (-) 1251 WP_004885675.1 diaminopimelate decarboxylase -
  AAH980_RS07620 (AAH980_07620) - 1631905..1632129 (-) 225 WP_002048546.1 lipoprotein -
  AAH980_RS07625 (AAH980_07625) - 1632270..1633676 (-) 1407 WP_004885673.1 amino acid permease -
  AAH980_RS07630 (AAH980_07630) - 1633977..1635395 (-) 1419 WP_002048578.1 amino acid permease -
  AAH980_RS07635 (AAH980_07635) radA/sms 1635571..1636959 (+) 1389 WP_004707421.1 DNA repair protein RadA Machinery gene
  AAH980_RS07640 (AAH980_07640) - 1637042..1638028 (+) 987 WP_002048497.1 Tim44-like domain-containing protein -
  AAH980_RS07645 (AAH980_07645) epmA 1638086..1639060 (-) 975 WP_284079723.1 EF-P lysine aminoacylase EpmA -
  AAH980_RS07650 (AAH980_07650) - 1639057..1640124 (-) 1068 WP_284079722.1 4-phosphoerythronate dehydrogenase -
  AAH980_RS07655 (AAH980_07655) - 1640228..1640620 (-) 393 WP_031981937.1 DUF1232 domain-containing protein -
  AAH980_RS07660 (AAH980_07660) fdhD 1640740..1641531 (-) 792 WP_004885663.1 formate dehydrogenase accessory sulfurtransferase FdhD -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49697.11 Da        Isoelectric Point: 7.4191

>NTDB_id=893604 AAH980_RS07635 WP_004707421.1 1635571..1636959(+) (radA/sms) [Acinetobacter nosocomialis strain Ab25]
MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVKLEPTTAHRARPKIGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=893604 AAH980_RS07635 WP_004707421.1 1635571..1636959(+) (radA/sms) [Acinetobacter nosocomialis strain Ab25]
ATGAGCAAAGTCAAAACTGTTTACCGTTGCGAACAATGTGGTGCAGATCATCCTAAATGGGCTGGTCAATGTTCAGAGTG
TGGTGAATGGAATTCTCTGACTGAAGTTAAACTCGAACCTACTACAGCCCATCGCGCTCGTCCTAAAATTGGGGGCTACG
CAGGCCAAGTTGCCAATATAACAACACTAAATAAAGTCTCGGTTTCTCATGAAACCCGCTTACCTACAGGTATTAGCGAG
TTTGACCGCGTACTTGGCGGTGGCTTGGTCACAGGCTCAGTAGTCCTGATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACCCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAAGAATCATTGTCTC
AGGTGGCCTTACGTGCTCAGCGCCTTGACTTGCCTACAGACCAGTTAAAAGTCATGGCTGAAACCTGTGTCGAACGCATT
TGTGAAGTTTTAGAGCAAGAACGCCCTGTGGTAGCAATTTTGGACTCGATTCAAACGCTTTACACAGAAACGCTTCAATC
TGCACCTGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGCTATGCAAAAAATAGTGGCACGGCGTTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCACTGGCAGGCCCACGTGTTTTAGAACATATGGTGGACTGTGTGCTTTAT
TTTGAAGGCCAATCAGACTCACGCTATCGTATGATTCGTGCGGTGAAAAACCGTTTTGGTGCAGTCAATGAACTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATTAGCCGTGAAGGAACGCGCCCGCTTTTAGTTGAAGTTCAAGCTTTAGTCGATGATGCTCAA
GGACAACCTAGACGTGTCGCTCTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTAATGCACCGTCATGGGGG
TGTACAAACTACAGGGCAAGACGTTTATGTCAATATTGTCGGTGGTTTAAAAATTACTGAAACAGGTTCTGACTTGGCTG
TTTTACTGGCATGTGCATCAAGTTTACGTACCAAGGCATTGCCTCAGCAACTTGCAGTTTTTGGTGAAGTGGGTCTTTCA
GGTGAAATCCGACCTGTACCGAATGGACAAGAGCGCTTAAAAGAAGCAGCAAAACATGGCTTTAAATATGTCATTTTACC
TAGAGGCAACGCACCACAAAAAGCGATTCCGGGAGTACAAGTAATTGCTGTAGCGCGCTTACATGAAGCCCTTACCGAAG
CGATGCAGCTCAGCGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KAH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.389

98.918

0.459
  radA Streptococcus mitis NCTC 12261

43.478

99.567

0.433
  radA Streptococcus pneumoniae D39

43.107

98.918

0.426
  radA Streptococcus pneumoniae TIGR4

43.107

98.918

0.426
  radA Streptococcus mitis SK321

43.107

98.918

0.426
  radA Streptococcus pneumoniae R6

43.107

98.918

0.426
  radA Streptococcus pneumoniae Rx1

43.107

98.918

0.426