Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   R3H37_RS01475 Genome accession   NZ_CP136948
Coordinates   278109..278660 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Spyo01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 273109..283660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H37_RS01475 (R3H37_01475) comX/sigX/comX2/sigX2 278109..278660 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  R3H37_RS01480 (R3H37_01480) truA 278847..279596 (+) 750 WP_002995162.1 tRNA pseudouridine(38-40) synthase TruA -
  R3H37_RS01485 (R3H37_01485) - 279586..280350 (+) 765 WP_020837773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  R3H37_RS01490 (R3H37_01490) - 280340..280810 (+) 471 WP_011106596.1 ECF transporter S component -
  R3H37_RS01495 (R3H37_01495) - 280824..281384 (+) 561 WP_002995157.1 TIGR01440 family protein -
  R3H37_RS01500 (R3H37_01500) - 281449..282294 (-) 846 WP_002982833.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=893594 R3H37_RS01475 WP_010921894.1 278109..278660(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Spyo01]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=893594 R3H37_RS01475 WP_010921894.1 278109..278660(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Spyo01]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.