Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | RJD36_RS06275 | Genome accession | NZ_CP136943 |
| Coordinates | 1212539..1213381 (+) | Length | 280 a.a. |
| NCBI ID | WP_003064756.1 | Uniprot ID | E0PDM2 |
| Organism | Streptococcus pasteurianus strain WUSP082 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1183072..1233557 | 1212539..1213381 | within | 0 |
Gene organization within MGE regions
Location: 1183072..1233557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJD36_RS06135 (RJD36_06135) | - | 1183072..1183263 (+) | 192 | WP_043028879.1 | calcium-binding protein | - |
| RJD36_RS06140 (RJD36_06140) | - | 1183247..1183798 (+) | 552 | WP_317751459.1 | hypothetical protein | - |
| RJD36_RS06145 (RJD36_06145) | - | 1183849..1189323 (+) | 5475 | WP_398578251.1 | DEAD/DEAH box helicase family protein | - |
| RJD36_RS06150 (RJD36_06150) | - | 1189821..1191338 (+) | 1518 | Protein_1149 | reverse transcriptase domain-containing protein | - |
| RJD36_RS06160 (RJD36_06160) | - | 1192717..1193814 (+) | 1098 | WP_398578252.1 | hypothetical protein | - |
| RJD36_RS06165 (RJD36_06165) | - | 1194145..1194504 (+) | 360 | WP_117508721.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| RJD36_RS06170 (RJD36_06170) | - | 1194514..1194879 (+) | 366 | WP_117508722.1 | MobC family plasmid mobilization relaxosome protein | - |
| RJD36_RS06175 (RJD36_06175) | - | 1194866..1195888 (+) | 1023 | Protein_1154 | SAG1250 family conjugative relaxase | - |
| RJD36_RS06180 (RJD36_06180) | - | 1195964..1197069 (+) | 1106 | WP_249551291.1 | IS3 family transposase | - |
| RJD36_RS06185 (RJD36_06185) | tnpB | 1197193..1197420 (+) | 228 | WP_230254186.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| RJD36_RS06190 (RJD36_06190) | - | 1197417..1197559 (+) | 143 | Protein_1157 | transposase | - |
| RJD36_RS06195 (RJD36_06195) | - | 1197640..1198529 (-) | 890 | Protein_1158 | IS3 family transposase | - |
| RJD36_RS06200 (RJD36_06200) | - | 1198620..1199336 (-) | 717 | WP_117508894.1 | CPBP family intramembrane glutamic endopeptidase | - |
| RJD36_RS06205 (RJD36_06205) | - | 1200086..1200259 (-) | 174 | WP_153308183.1 | hypothetical protein | - |
| RJD36_RS06210 (RJD36_06210) | - | 1200253..1200417 (+) | 165 | WP_153308184.1 | hypothetical protein | - |
| RJD36_RS06215 (RJD36_06215) | - | 1201931..1203036 (+) | 1106 | WP_249551291.1 | IS3 family transposase | - |
| RJD36_RS06220 (RJD36_06220) | - | 1203081..1204562 (-) | 1482 | Protein_1163 | Nramp family divalent metal transporter | - |
| RJD36_RS06225 (RJD36_06225) | - | 1204867..1205255 (+) | 389 | Protein_1164 | transposase | - |
| RJD36_RS06235 (RJD36_06235) | - | 1206754..1206882 (+) | 129 | Protein_1166 | peptidase | - |
| RJD36_RS06240 (RJD36_06240) | - | 1206910..1207272 (+) | 363 | WP_142917765.1 | LPXTG cell wall anchor domain-containing protein | - |
| RJD36_RS06245 (RJD36_06245) | - | 1207763..1207978 (+) | 216 | WP_000498035.1 | helix-turn-helix domain-containing protein | - |
| RJD36_RS06250 (RJD36_06250) | - | 1208367..1208600 (+) | 234 | WP_047210205.1 | hypothetical protein | - |
| RJD36_RS06255 (RJD36_06255) | - | 1208688..1210196 (+) | 1509 | WP_106474485.1 | tyrosine-type recombinase/integrase | - |
| RJD36_RS06260 (RJD36_06260) | ylqF | 1210291..1211145 (+) | 855 | WP_003064765.1 | ribosome biogenesis GTPase YlqF | - |
| RJD36_RS06265 (RJD36_06265) | - | 1211132..1211911 (+) | 780 | WP_117508882.1 | ribonuclease HII | - |
| RJD36_RS06270 (RJD36_06270) | - | 1211913..1212464 (+) | 552 | WP_003064760.1 | sugar O-acetyltransferase | - |
| RJD36_RS06275 (RJD36_06275) | dprA | 1212539..1213381 (+) | 843 | WP_003064756.1 | DNA-processing protein DprA | Machinery gene |
| RJD36_RS06280 (RJD36_06280) | topA | 1213758..1215899 (+) | 2142 | WP_048791149.1 | type I DNA topoisomerase | - |
| RJD36_RS06285 (RJD36_06285) | - | 1216047..1216712 (+) | 666 | WP_048791148.1 | SatD family protein | - |
| RJD36_RS06290 (RJD36_06290) | - | 1216712..1217431 (+) | 720 | WP_082144658.1 | DUF3307 domain-containing protein | - |
| RJD36_RS06295 (RJD36_06295) | - | 1217448..1217930 (+) | 483 | WP_003064748.1 | hypothetical protein | - |
| RJD36_RS06300 (RJD36_06300) | trmFO | 1218107..1219444 (+) | 1338 | WP_058692307.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| RJD36_RS06305 (RJD36_06305) | - | 1219553..1219762 (+) | 210 | WP_240208141.1 | hypothetical protein | - |
| RJD36_RS06310 (RJD36_06310) | - | 1220444..1221196 (+) | 753 | WP_003064738.1 | ABC transporter ATP-binding protein | - |
| RJD36_RS06315 (RJD36_06315) | - | 1221198..1223177 (+) | 1980 | WP_013851819.1 | FtsX-like permease family protein | - |
| RJD36_RS06320 (RJD36_06320) | - | 1223265..1223927 (+) | 663 | WP_172456417.1 | response regulator transcription factor | - |
| RJD36_RS06325 (RJD36_06325) | - | 1223924..1224871 (+) | 948 | WP_048791145.1 | HAMP domain-containing sensor histidine kinase | - |
| RJD36_RS06330 (RJD36_06330) | - | 1224955..1225635 (+) | 681 | WP_003064733.1 | XRE family transcriptional regulator | - |
| RJD36_RS06335 (RJD36_06335) | xerS | 1225742..1226812 (-) | 1071 | WP_003064732.1 | tyrosine recombinase XerS | - |
| RJD36_RS06340 (RJD36_06340) | - | 1227078..1227539 (-) | 462 | WP_240208139.1 | RNase H family protein | - |
| RJD36_RS06345 (RJD36_06345) | - | 1228062..1229167 (+) | 1106 | WP_249551291.1 | IS3 family transposase | - |
| RJD36_RS06350 (RJD36_06350) | - | 1229409..1230314 (-) | 906 | WP_317749865.1 | hypothetical protein | - |
| RJD36_RS06355 (RJD36_06355) | - | 1230441..1230719 (-) | 279 | WP_317581319.1 | hypothetical protein | - |
| RJD36_RS06360 (RJD36_06360) | - | 1230695..1232731 (-) | 2037 | WP_287935667.1 | N-6 DNA methylase | - |
| RJD36_RS06365 (RJD36_06365) | - | 1233012..1233557 (-) | 546 | WP_003064722.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 280 a.a. Molecular weight: 31027.10 Da Isoelectric Point: 8.3615
>NTDB_id=893551 RJD36_RS06275 WP_003064756.1 1212539..1213381(+) (dprA) [Streptococcus pasteurianus strain WUSP082]
MNNFELFKLKKAGLTNLNILAILDYQEKQEKSLSLRNMAVVSKCKNPILFMEKYKALDIKELRKEFNCFPSVSILDDEYP
LELKHCYNPPVLLFYQGNLELLNRPKMAVVGARTASATGTKSVQKIVKELGNHFVIVSGLARGIDTSAHLSSLKNGGASI
AVIGCGLDVYYPKENKQLQEYMVKNHLVLSEYVAGEAPLKFHFPERNRIIAGLSQGVIVVEAKLRSGSLITCERALEEGR
DVFAIPGNILDGKSDGCHHLIKEGAKCVTSGLDILSEYQI
MNNFELFKLKKAGLTNLNILAILDYQEKQEKSLSLRNMAVVSKCKNPILFMEKYKALDIKELRKEFNCFPSVSILDDEYP
LELKHCYNPPVLLFYQGNLELLNRPKMAVVGARTASATGTKSVQKIVKELGNHFVIVSGLARGIDTSAHLSSLKNGGASI
AVIGCGLDVYYPKENKQLQEYMVKNHLVLSEYVAGEAPLKFHFPERNRIIAGLSQGVIVVEAKLRSGSLITCERALEEGR
DVFAIPGNILDGKSDGCHHLIKEGAKCVTSGLDILSEYQI
Nucleotide
Download Length: 843 bp
>NTDB_id=893551 RJD36_RS06275 WP_003064756.1 1212539..1213381(+) (dprA) [Streptococcus pasteurianus strain WUSP082]
ATGAATAATTTTGAATTGTTTAAATTAAAAAAAGCAGGATTAACAAATCTTAATATTTTAGCTATTTTGGATTATCAAGA
AAAGCAAGAGAAATCACTATCTTTGCGTAATATGGCAGTCGTCTCAAAATGTAAAAATCCTATCCTTTTTATGGAAAAAT
ACAAAGCACTGGACATCAAAGAATTGCGCAAAGAATTTAATTGTTTTCCTAGTGTTTCCATACTAGATGACGAATACCCA
TTAGAACTCAAACATTGTTATAATCCACCTGTTTTGCTGTTTTATCAAGGAAATTTAGAATTACTCAATCGCCCAAAAAT
GGCAGTAGTAGGAGCAAGAACAGCATCAGCAACAGGGACAAAATCCGTACAGAAAATTGTCAAAGAACTCGGGAATCATT
TTGTTATCGTTAGTGGGTTGGCGCGTGGCATTGATACCAGTGCGCATTTATCATCTCTAAAAAACGGTGGTGCATCGATT
GCCGTTATCGGTTGTGGACTGGACGTTTATTATCCCAAAGAAAATAAGCAGTTGCAGGAGTACATGGTTAAAAATCACCT
CGTATTAAGTGAGTACGTAGCAGGAGAAGCACCGCTGAAATTCCATTTTCCAGAGCGAAATCGTATTATTGCAGGTTTAT
CACAAGGCGTTATCGTAGTAGAAGCTAAGCTGCGCTCAGGCAGTTTGATTACGTGCGAAAGAGCATTGGAAGAAGGACGA
GACGTTTTTGCCATTCCAGGAAATATTTTAGATGGGAAATCTGATGGCTGTCATCATTTGATAAAAGAGGGCGCAAAATG
CGTCACATCAGGCTTAGATATCCTTTCGGAATATCAAATATAA
ATGAATAATTTTGAATTGTTTAAATTAAAAAAAGCAGGATTAACAAATCTTAATATTTTAGCTATTTTGGATTATCAAGA
AAAGCAAGAGAAATCACTATCTTTGCGTAATATGGCAGTCGTCTCAAAATGTAAAAATCCTATCCTTTTTATGGAAAAAT
ACAAAGCACTGGACATCAAAGAATTGCGCAAAGAATTTAATTGTTTTCCTAGTGTTTCCATACTAGATGACGAATACCCA
TTAGAACTCAAACATTGTTATAATCCACCTGTTTTGCTGTTTTATCAAGGAAATTTAGAATTACTCAATCGCCCAAAAAT
GGCAGTAGTAGGAGCAAGAACAGCATCAGCAACAGGGACAAAATCCGTACAGAAAATTGTCAAAGAACTCGGGAATCATT
TTGTTATCGTTAGTGGGTTGGCGCGTGGCATTGATACCAGTGCGCATTTATCATCTCTAAAAAACGGTGGTGCATCGATT
GCCGTTATCGGTTGTGGACTGGACGTTTATTATCCCAAAGAAAATAAGCAGTTGCAGGAGTACATGGTTAAAAATCACCT
CGTATTAAGTGAGTACGTAGCAGGAGAAGCACCGCTGAAATTCCATTTTCCAGAGCGAAATCGTATTATTGCAGGTTTAT
CACAAGGCGTTATCGTAGTAGAAGCTAAGCTGCGCTCAGGCAGTTTGATTACGTGCGAAAGAGCATTGGAAGAAGGACGA
GACGTTTTTGCCATTCCAGGAAATATTTTAGATGGGAAATCTGATGGCTGTCATCATTTGATAAAAGAGGGCGCAAAATG
CGTCACATCAGGCTTAGATATCCTTTCGGAATATCAAATATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Streptococcus mutans UA159 |
74.46 |
99.286 |
0.739 |
| dprA/cilB/dalA | Streptococcus mitis NCTC 12261 |
63.929 |
100 |
0.639 |
| dprA/cilB/dalA | Streptococcus pneumoniae Rx1 |
63.929 |
100 |
0.639 |
| dprA/cilB/dalA | Streptococcus pneumoniae D39 |
63.929 |
100 |
0.639 |
| dprA/cilB/dalA | Streptococcus pneumoniae R6 |
63.929 |
100 |
0.639 |
| dprA/cilB/dalA | Streptococcus pneumoniae TIGR4 |
63.929 |
100 |
0.639 |
| dprA/cilB/dalA | Streptococcus mitis SK321 |
63.929 |
100 |
0.639 |
| dprA | Lactococcus lactis subsp. cremoris KW2 |
61.871 |
99.286 |
0.614 |
| dprA | Legionella pneumophila strain ERS1305867 |
42.739 |
86.071 |
0.368 |
| dprA | Haemophilus influenzae Rd KW20 |
38.258 |
94.286 |
0.361 |