Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   RJD36_RS05755 Genome accession   NZ_CP136943
Coordinates   1100388..1101062 (+) Length   224 a.a.
NCBI ID   WP_013851854.1    Uniprot ID   A0AAW6YDN2
Organism   Streptococcus pasteurianus strain WUSP082     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095388..1106062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS05740 (RJD36_05740) pstB 1095986..1096744 (+) 759 WP_013851855.1 phosphate ABC transporter ATP-binding protein PstB -
  RJD36_RS05745 (RJD36_05745) phoU 1096776..1097429 (+) 654 WP_003064885.1 phosphate signaling complex protein PhoU -
  RJD36_RS05750 (RJD36_05750) - 1097652..1100195 (+) 2544 WP_003064884.1 M1 family metallopeptidase -
  RJD36_RS05755 (RJD36_05755) ciaR 1100388..1101062 (+) 675 WP_013851854.1 response regulator transcription factor Regulator
  RJD36_RS05760 (RJD36_05760) ciaH 1101052..1102392 (+) 1341 WP_003064880.1 cell wall metabolism sensor histidine kinase WalK Regulator
  RJD36_RS05765 (RJD36_05765) rpsT 1102508..1102759 (-) 252 WP_003064878.1 30S ribosomal protein S20 -
  RJD36_RS05770 (RJD36_05770) coaA 1102834..1103754 (-) 921 WP_003064875.1 type I pantothenate kinase -
  RJD36_RS05775 (RJD36_05775) - 1103870..1104463 (+) 594 WP_003064873.1 class I SAM-dependent methyltransferase -
  RJD36_RS05780 (RJD36_05780) deoC 1104919..1105581 (+) 663 WP_013851852.1 deoxyribose-phosphate aldolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25427.14 Da        Isoelectric Point: 4.3831

>NTDB_id=893549 RJD36_RS05755 WP_013851854.1 1100388..1101062(+) (ciaR) [Streptococcus pasteurianus strain WUSP082]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKDGFQVLKELREKSVSTPVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFSDNNLSYGELTVTTSTNTTTINGKEVEMLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFAKNLQTLRSVGYILKNAE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=893549 RJD36_RS05755 WP_013851854.1 1100388..1101062(+) (ciaR) [Streptococcus pasteurianus strain WUSP082]
ATGATTAAAATATTATTAGTAGAAGACGATTTGAGTTTATCTAATTCCATTTTTGATTTTTTAGACGATTTTGCTGATGT
AATGCAAGTGTTTGATGGCGAGGAAGGTTTGTATGAAGCAGAGAGTGGTGTATATGACCTTATTCTACTTGACCTAATGT
TACCTGAGAAAGATGGCTTCCAGGTTCTAAAAGAATTACGAGAAAAGTCTGTATCAACACCTGTACTTATTATGACTGCG
AAAGAAAGCCTCGACGATAAAGGACATGGATTTGAGTTGGGAGCTGATGATTATTTAACTAAACCCTTTTACCTTGAGGA
ATTAAAAATGCGTATCCAAGCTCTTTTGAAACGTTCTGGTAAGTTTAGTGATAATAATTTGTCTTATGGAGAGCTAACTG
TTACTACTTCTACTAATACAACAACTATTAATGGTAAAGAAGTGGAAATGCTTGGTAAAGAATTTGACTTGTTGGTTTAT
TTCTTACAAAATCAAAATGTTATTTTACCAAAATCACAAATTTTTGATCGTATTTGGGGCTTTGATAGTGATACAACGAT
TTCGGTTGTTGAGGTTTACGTTTCAAAAATTCGAAAAAAACTTAAAGGCACTACTTTTGCTAAAAACCTTCAGACCCTAC
GGAGTGTAGGTTATATTCTGAAAAATGCTGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

92.377

99.554

0.92
  ciaR Streptococcus pneumoniae Rx1

86.161

100

0.862
  ciaR Streptococcus pneumoniae D39

86.161

100

0.862
  ciaR Streptococcus pneumoniae R6

86.161

100

0.862
  ciaR Streptococcus pneumoniae TIGR4

86.161

100

0.862
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.667

100

0.388
  vicR Streptococcus mutans UA159

35.47

100

0.371
  micA Streptococcus pneumoniae Cp1015

35.622

100

0.371