Detailed information NTG0089333

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: OCU42_RS01365
• Genome accession: NZ_AP024905
• Coordinates: 306055..307185 (+)
• Length: 376 a.a.
• NCBI ID: WP_261855953.1
• Uniprot ID: -
• Organism: Vibrio ruber strain LMG 23124
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 301055..312185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU42_RS01345	-	301067..303625 (-)	2559	WP_077336302.1	penicillin-binding protein 1A	-
OCU42_RS01350	pilM	303898..304809 (+)	912	WP_077336304.1	pilus assembly protein PilM	-
OCU42_RS01355	-	304799..305464 (+)	666	WP_077336306.1	PilN domain-containing protein	-
OCU42_RS01360	pilO	305451..306068 (+)	618	WP_077336307.1	type 4a pilus biogenesis protein PilO	-
OCU42_RS01365	pilQ	306055..307185 (+)	1131	WP_261855953.1	type IV pilus secretin PilQ	Machinery gene
OCU42_RS01370	aroK	307374..307892 (+)	519	WP_021019597.1	shikimate kinase AroK	-
OCU42_RS01375	aroB	307920..309008 (+)	1089	WP_077336310.1	3-dehydroquinate synthase	-
OCU42_RS01380	-	309045..310598 (+)	1554	WP_077336312.1	AAA family ATPase	-
OCU42_RS01385	-	310679..311518 (+)	840	WP_077336313.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 40778.39 Da
• Isoelectric Point: 4.9829

>NTDB_id=89333 OCU42_RS01365 WP_261855953.1 306055..307185(+) (pilQ) [Vibrio ruber strain LMG 23124]
MSQNNYRSVLSDIRVIGGILWGVWTQGFAQPAIDPFDVPSTAQSGLFSEKTSDSPQPVLETALIPIQYAKTAEFIPLLEG
GEQPGLLSKSGWVRVEPRTNSLIIHDTPQHLAAIRSMIEAIDIPVKQVRIEARIVIVSEGALDELGVRWGAGLKQGHFAV
GGHIEQLHAAGDDAKPSQVTDFMNINLPSTSGNASSIAFQLAKLGSGTLLDLELSALQSESRAEIISSPSLLTTNHQAAF
IEQGTEIPYQESSSDDETTIAFKKAVLSLEVTPNITADHHMLLDLRVTQDRPGEVVKTGSGEAVAITTQRIGTQVLVNDG
ETVVLGGIYQKTQMHRVDKVPLLGELPLLGKLFQRNYQKTDKNELLIFVTPRVVIQ

Nucleotide

• Length: 1131 bp

>NTDB_id=89333 OCU42_RS01365 WP_261855953.1 306055..307185(+) (pilQ) [Vibrio ruber strain LMG 23124]
ATGAGTCAAAATAACTATCGGAGTGTGCTGTCTGACATCAGGGTGATAGGAGGAATTTTATGGGGCGTGTGGACTCAGGG
ATTTGCTCAGCCGGCTATTGATCCATTTGATGTGCCGTCAACCGCACAATCCGGTCTTTTCTCCGAAAAGACGTCTGATT
CTCCACAACCGGTGTTGGAAACAGCGTTAATCCCGATTCAGTATGCGAAAACGGCGGAATTCATACCGCTTCTGGAAGGG
GGAGAACAACCGGGGTTGCTTTCTAAATCTGGATGGGTACGCGTTGAACCACGGACAAACTCGCTGATTATTCACGATAC
GCCTCAGCATTTGGCAGCGATCCGGAGCATGATTGAAGCGATCGATATTCCGGTGAAACAGGTCAGAATTGAAGCGAGGA
TTGTGATTGTCAGCGAAGGGGCGCTTGATGAGCTCGGTGTGCGCTGGGGCGCAGGGCTGAAGCAAGGACATTTTGCCGTT
GGCGGACATATTGAACAGCTCCATGCGGCAGGTGATGATGCAAAACCATCACAAGTAACCGATTTTATGAATATTAATCT
GCCGAGCACATCTGGCAACGCCTCATCGATTGCTTTTCAACTGGCAAAGTTGGGATCCGGTACACTACTGGATTTAGAGT
TATCGGCATTACAGAGTGAATCTCGTGCTGAGATTATTTCCAGCCCCAGTCTGTTAACCACAAATCATCAGGCTGCATTT
ATCGAACAAGGGACTGAAATTCCGTATCAGGAGTCGAGTTCGGATGATGAAACCACCATTGCATTCAAAAAAGCAGTGTT
GAGTCTGGAGGTAACCCCGAATATCACAGCGGATCACCATATGTTGCTGGATTTACGCGTAACACAAGATCGTCCCGGAG
AGGTGGTTAAAACCGGTTCCGGAGAAGCGGTTGCCATTACCACGCAACGAATTGGTACTCAAGTGCTCGTCAATGACGGA
GAAACGGTTGTACTCGGGGGAATTTATCAGAAAACCCAAATGCACCGGGTTGATAAAGTACCGCTATTGGGAGAGTTGCC
GCTATTAGGCAAACTGTTTCAGCGTAATTATCAAAAGACAGATAAGAATGAGTTGCTTATTTTTGTCACGCCCCGGGTTG
TGATTCAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (216-374)

• Bacterial type II/III secretion system short domain (Secretin_N) (62-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio cholerae strain A1552	62.422	85.638	0.535
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	62.422	85.638	0.535
pilQ	Vibrio campbellii strain DS40M4	59.146	87.234	0.516
pilQ	Legionella pneumophila strain ERS1305867	46.131	89.362	0.412
pilQ	Legionella pneumophila strain Lp02	46.131	89.362	0.412
comQ	Acinetobacter baylyi ADP1	41.954	92.553	0.388
comE	Glaesserella parasuis strain SC1401	42.812	85.106	0.364
comE	Haemophilus influenzae Rd KW20	42.5	85.106	0.362
comE	Haemophilus influenzae 86-028NP	42.5	85.106	0.362