Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RYQ61_RS06590 Genome accession   NZ_CP136799
Coordinates   1280280..1280870 (+) Length   196 a.a.
NCBI ID   WP_003073523.1    Uniprot ID   A0A428EQY4
Organism   Streptococcus intermedius strain XH2169     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275280..1285870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS06580 (RYQ61_06580) mgtA 1276786..1279440 (+) 2655 WP_003073527.1 magnesium-translocating P-type ATPase -
  RYQ61_RS06585 (RYQ61_06585) upp 1279538..1280167 (+) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  RYQ61_RS06590 (RYQ61_06590) clpP 1280280..1280870 (+) 591 WP_003073523.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RYQ61_RS06595 (RYQ61_06595) - 1280961..1281230 (+) 270 WP_003073520.1 DUF2129 domain-containing protein -
  RYQ61_RS06600 (RYQ61_06600) - 1281313..1282476 (+) 1164 WP_102567769.1 ABC transporter substrate-binding protein -
  RYQ61_RS06605 (RYQ61_06605) - 1282860..1283729 (+) 870 WP_003043257.1 branched-chain amino acid ABC transporter permease -
  RYQ61_RS06610 (RYQ61_06610) - 1283733..1284683 (+) 951 WP_003078202.1 branched-chain amino acid ABC transporter permease -
  RYQ61_RS06615 (RYQ61_06615) - 1284683..1285447 (+) 765 WP_003070045.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21489.56 Da        Isoelectric Point: 4.8097

>NTDB_id=892735 RYQ61_RS06590 WP_003073523.1 1280280..1280870(+) (clpP) [Streptococcus intermedius strain XH2169]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILADNSGK
TVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=892735 RYQ61_RS06590 WP_003073523.1 1280280..1280870(+) (clpP) [Streptococcus intermedius strain XH2169]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTACTCACGTCTTTTAAAAGATCGCAT
TATTATGCTAACTGGAGCAGTTGAAGACAACATGGCCAATTCTATTATTGCCCAACTGCTTTTCCTAGATGCTCAAGATA
GTACAAAGGATATTTATCTTTATATCAATACGCCAGGAGGTTCTGTATCGGCGGGTCTAGCGATTGTCGATACAATGAAC
TTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCGTCCATGGGAACCATCATCGCTTCAAGTGGTGCTAA
AGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGAACTGGTGGCGGTACGCAACAAA
CCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAAATTCTTGCAGATAACTCTGGTAAG
ACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGAAACACTAGATTATGGTTTCATTGA
TGAAATCATGGCAAATAACAACTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428EQY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

100

0.918
  clpP Streptococcus pneumoniae R6

91.837

100

0.918
  clpP Streptococcus pneumoniae TIGR4

91.837

100

0.918
  clpP Streptococcus pneumoniae D39

91.837

100

0.918
  clpP Streptococcus thermophilus LMG 18311

91.795

99.49

0.913
  clpP Streptococcus thermophilus LMD-9

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

91.282

99.49

0.908
  clpP Streptococcus pyogenes JRS4

91.282

99.49

0.908
  clpP Streptococcus mutans UA159

91.282

99.49

0.908
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

99.49

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

99.49

0.842
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

98.469

0.577
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566