Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RVY84_RS13420 Genome accession   NZ_CP136661
Coordinates   2609528..2610109 (-) Length   193 a.a.
NCBI ID   WP_071728948.1    Uniprot ID   A0A4S4HPB8
Organism   Bacillus sp. 3P20     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2607248..2619539 2609528..2610109 within 0


Gene organization within MGE regions


Location: 2607248..2619539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS13410 (RVY84_13390) - 2607248..2608453 (-) 1206 WP_000370609.1 quaternary amine ABC transporter ATP-binding protein -
  RVY84_RS13415 (RVY84_13395) - 2608625..2609482 (+) 858 WP_001227634.1 glycine betaine ABC transporter substrate-binding protein -
  RVY84_RS13420 (RVY84_13400) clpP 2609528..2610109 (-) 582 WP_071728948.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RVY84_RS13425 (RVY84_13405) - 2610131..2610817 (-) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  RVY84_RS13430 (RVY84_13410) - 2610961..2611281 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  RVY84_RS13435 (RVY84_13415) rpiA 2611286..2611948 (+) 663 WP_128294877.1 ribose 5-phosphate isomerase A -
  RVY84_RS13440 (RVY84_13420) - 2612056..2612490 (+) 435 WP_000555719.1 GNAT family N-acetyltransferase -
  RVY84_RS13445 (RVY84_13425) - 2612620..2613987 (-) 1368 WP_001065247.1 lytic polysaccharide monooxygenase -
  RVY84_RS13450 (RVY84_13430) - 2614425..2614943 (-) 519 WP_088016029.1 DNA topology modulation protein -
  RVY84_RS13455 (RVY84_13435) - 2614940..2615119 (-) 180 Protein_2572 aminoglycoside phosphotransferase -
  RVY84_RS13460 (RVY84_13440) - 2615153..2615539 (-) 387 WP_001093444.1 DUF2809 domain-containing protein -
  RVY84_RS13465 (RVY84_13445) - 2615605..2615733 (-) 129 WP_000655492.1 hypothetical protein -
  RVY84_RS13470 (RVY84_13450) - 2615755..2615892 (-) 138 Protein_2575 MmcQ/YjbR family DNA-binding protein -
  RVY84_RS13475 (RVY84_13455) - 2615998..2616801 (-) 804 WP_000218991.1 DUF1835 domain-containing protein -
  RVY84_RS13480 (RVY84_13460) - 2616877..2617212 (-) 336 WP_088356485.1 MmcQ/YjbR family DNA-binding protein -
  RVY84_RS13485 (RVY84_13465) - 2617225..2617629 (-) 405 WP_000288935.1 GNAT family N-acetyltransferase -
  RVY84_RS13490 (RVY84_13470) - 2617883..2618359 (+) 477 Protein_2579 S-layer homology domain-containing protein -
  RVY84_RS13495 (RVY84_13475) - 2618455..2618667 (+) 213 WP_000820169.1 DUF3006 domain-containing protein -
  RVY84_RS13500 (RVY84_13480) - 2618733..2619539 (-) 807 WP_070171539.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21148.44 Da        Isoelectric Point: 5.3394

>NTDB_id=892322 RVY84_RS13420 WP_071728948.1 2609528..2610109(-) (clpP) [Bacillus sp. 3P20]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVAKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=892322 RVY84_RS13420 WP_071728948.1 2609528..2610109(-) (clpP) [Bacillus sp. 3P20]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCAAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATCAAACCCGACGTGCAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAGCGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTGCGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4HPB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.368

98.446

0.663
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539
  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

50.794

97.927

0.497
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487