NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	R0492_RS19560	Genome accession	NZ_CP136649
Coordinates	3734509..3735081 (-)	Length	190 a.a.
NCBI ID	WP_003185937.1	Uniprot ID	A0A415J8E4
Organism	Bacillus licheniformis strain NXU98
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3729509..3740081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R0492_RS19535	-	3729834..3730241 (-)	408	WP_003185927.1	CBS domain-containing protein	-
R0492_RS19540	-	3730304..3731260 (-)	957	WP_003185929.1	magnesium transporter CorA family protein	-
R0492_RS19545	-	3731421..3732719 (+)	1299	WP_003185931.1	hemolysin family protein	-
R0492_RS19550	-	3732880..3734091 (+)	1212	WP_003185933.1	ammonium transporter	-
R0492_RS19555	-	3734110..3734460 (+)	351	WP_003185936.1	P-II family nitrogen regulator	-
R0492_RS19560	clpP	3734509..3735081 (-)	573	WP_003185937.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R0492_RS19565	-	3735095..3735700 (-)	606	WP_011198380.1	RNA polymerase sigma factor	-
R0492_RS19570	-	3735837..3736712 (-)	876	WP_003185941.1	M23 family metallopeptidase	-
R0492_RS19575	-	3736905..3737402 (+)	498	WP_011198381.1	GNAT family N-acetyltransferase	-
R0492_RS19580	-	3737450..3737893 (-)	444	WP_009329719.1	YwnF family protein	-
R0492_RS19585	cls	3738143..3739591 (+)	1449	WP_025806104.1	cardiolipin synthase	-

Sequence

Protein

Download Length: 190 a.a. Molecular weight: 21049.23 Da Isoelectric Point: 5.3785

                                >NTDB_id=892254 R0492_RS19560 WP_003185937.1 3734509..3735081(-) (clpP) [Bacillus licheniformis strain NXU98]

MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT

MDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQ

PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide

Download Length: 573 bp

                                >NTDB_id=892254 R0492_RS19560 WP_003185937.1 3734509..3735081(-) (clpP) [Bacillus licheniformis strain NXU98]

ATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA

CCGGATCATTATGATCGGTTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAATTGCTGTTTTTGTCAGCTG

AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCAATTTTGGATACG

ATGGATTATGTGAAGCCTGATGTCCGCACGATATGCGTCGGAATGGCCGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG

AGCAAAAGGCAAACGGTATGCACTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA

CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCGCTTCTTTCACGAACGAACGGGCCAG

CCCATTGAAAAACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTTATTGA

TGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A415J8E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	65.263	100	0.653
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.567	98.421	0.616
clpP	Streptococcus thermophilus LMD-9	55.556	99.474	0.553
clpP	Streptococcus pneumoniae Rx1	55.556	99.474	0.553
clpP	Streptococcus pneumoniae D39	55.556	99.474	0.553
clpP	Streptococcus thermophilus LMG 18311	55.556	99.474	0.553
clpP	Streptococcus pneumoniae R6	55.556	99.474	0.553
clpP	Streptococcus pneumoniae TIGR4	55.556	99.474	0.553
clpP	Streptococcus mutans UA159	55.026	99.474	0.547
clpP	Streptococcus pyogenes JRS4	54.497	99.474	0.542
clpP	Streptococcus pyogenes MGAS315	54.497	99.474	0.542
clpP	Lactococcus lactis subsp. cremoris KW2	51.852	99.474	0.516
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.323	99.474	0.511

Detailed information NTG0892254