Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RZ534_RS10480 Genome accession   NZ_CP136643
Coordinates   2055961..2056596 (+) Length   211 a.a.
NCBI ID   WP_096881568.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050961..2061596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS10440 (RZ534_10440) - 2051125..2052243 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  RZ534_RS10445 (RZ534_10445) - 2052293..2052799 (-) 507 WP_065460619.1 PTS glucose transporter subunit IIA -
  RZ534_RS10450 (RZ534_10450) - 2052968..2053387 (+) 420 WP_073414769.1 Hsp20/alpha crystallin family protein -
  RZ534_RS10455 (RZ534_10455) - 2053409..2053861 (-) 453 WP_017359729.1 YppG family protein -
  RZ534_RS10460 (RZ534_10460) - 2053970..2054350 (-) 381 WP_225310452.1 YppE family protein -
  RZ534_RS10465 (RZ534_10465) - 2054400..2054633 (-) 234 WP_234717153.1 DUF5446 family protein -
  RZ534_RS10470 (RZ534_10470) sspM 2054830..2054934 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  RZ534_RS10475 (RZ534_10475) - 2054958..2055914 (-) 957 WP_035391684.1 DUF2515 domain-containing protein -
  RZ534_RS10480 (RZ534_10480) recU 2055961..2056596 (+) 636 WP_096881568.1 Holliday junction resolvase RecU Machinery gene
  RZ534_RS10485 (RZ534_10485) - 2056616..2059303 (+) 2688 WP_317327530.1 PBP1A family penicillin-binding protein -
  RZ534_RS10490 (RZ534_10490) - 2059339..2059848 (-) 510 WP_035391678.1 YpoC family protein -
  RZ534_RS10495 (RZ534_10495) nth 2059845..2060507 (-) 663 WP_008344602.1 endonuclease III -
  RZ534_RS10500 (RZ534_10500) - 2060525..2061229 (-) 705 WP_008344601.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24323.61 Da        Isoelectric Point: 9.6582

>NTDB_id=892136 RZ534_RS10480 WP_096881568.1 2055961..2056596(+) (recU) [Bacillus altitudinis strain RS1]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=892136 RZ534_RS10480 WP_096881568.1 2055961..2056596(+) (recU) [Bacillus altitudinis strain RS1]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697