Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RZ534_RS11630 Genome accession   NZ_CP136643
Coordinates   2264362..2264697 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2259362..2269697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS11610 (RZ534_11610) gcvT 2259838..2260935 (-) 1098 WP_017357975.1 glycine cleavage system aminomethyltransferase GcvT -
  RZ534_RS11615 (RZ534_11615) - 2261497..2263167 (+) 1671 WP_017357976.1 DEAD/DEAH box helicase -
  RZ534_RS11620 (RZ534_11620) - 2263182..2263979 (+) 798 WP_035390802.1 YqhG family protein -
  RZ534_RS11625 (RZ534_11625) - 2264164..2264328 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  RZ534_RS11630 (RZ534_11630) sinR 2264362..2264697 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  RZ534_RS11635 (RZ534_11635) tasA 2264765..2265565 (-) 801 WP_035390805.1 biofilm matrix protein TasA -
  RZ534_RS11640 (RZ534_11640) sipW 2265624..2266196 (-) 573 WP_041091749.1 signal peptidase I SipW -
  RZ534_RS11645 (RZ534_11645) tapA 2266246..2266773 (-) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  RZ534_RS11650 (RZ534_11650) - 2267026..2267352 (+) 327 WP_083561443.1 DUF3889 domain-containing protein -
  RZ534_RS11655 (RZ534_11655) - 2267386..2267580 (-) 195 WP_034319624.1 YqzE family protein -
  RZ534_RS11660 (RZ534_11660) - 2267641..2268024 (-) 384 WP_317327607.1 competence type IV pilus minor pilin ComGG -
  RZ534_RS11665 (RZ534_11665) comGF 2268021..2268518 (-) 498 WP_317327609.1 competence type IV pilus minor pilin ComGF -
  RZ534_RS11670 (RZ534_11670) comGE 2268460..2268774 (-) 315 WP_317327610.1 competence type IV pilus minor pilin ComGE -
  RZ534_RS11675 (RZ534_11675) comGD 2268758..2269204 (-) 447 WP_116307138.1 competence type IV pilus minor pilin ComGD -
  RZ534_RS11680 (RZ534_11680) comGC 2269197..2269490 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=892139 RZ534_RS11630 WP_017357978.1 2264362..2264697(+) (sinR) [Bacillus altitudinis strain RS1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=892139 RZ534_RS11630 WP_017357978.1 2264362..2264697(+) (sinR) [Bacillus altitudinis strain RS1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928