Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RZ534_RS09110 Genome accession   NZ_CP136643
Coordinates   1791755..1792135 (+) Length   126 a.a.
NCBI ID   WP_230677017.1    Uniprot ID   -
Organism   Bacillus altitudinis strain RS1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1786755..1797135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS09100 (RZ534_09100) - 1788479..1789387 (+) 909 WP_008343827.1 serine protease -
  RZ534_RS09105 (RZ534_09105) - 1789534..1791528 (+) 1995 WP_255835937.1 glycosyltransferase family 39 protein -
  RZ534_RS09110 (RZ534_09110) nucA/comI 1791755..1792135 (+) 381 WP_230677017.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RZ534_RS09115 (RZ534_09115) - 1792279..1793127 (+) 849 WP_008343823.1 STAS domain-containing protein -
  RZ534_RS09120 (RZ534_09120) - 1793162..1793704 (-) 543 WP_008343822.1 IseA DL-endopeptidase inhibitor family protein -
  RZ534_RS09125 (RZ534_09125) - 1794001..1794444 (+) 444 WP_008343821.1 hypothetical protein -
  RZ534_RS09130 (RZ534_09130) lexA 1794492..1795112 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  RZ534_RS09135 (RZ534_09135) yneA 1795271..1795582 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  RZ534_RS09140 (RZ534_09140) - 1795600..1796247 (+) 648 WP_019744126.1 recombinase family protein -
  RZ534_RS09145 (RZ534_09145) - 1796317..1796547 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13818.48 Da        Isoelectric Point: 7.9019

>NTDB_id=892135 RZ534_RS09110 WP_230677017.1 1791755..1792135(+) (nucA/comI) [Bacillus altitudinis strain RS1]
MGALLGGFGEDRFAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=892135 RZ534_RS09110 WP_230677017.1 1791755..1792135(+) (nucA/comI) [Bacillus altitudinis strain RS1]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTTCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556