Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RZ534_RS08140 Genome accession   NZ_CP136643
Coordinates   1587121..1588023 (+) Length   300 a.a.
NCBI ID   WP_008344822.1    Uniprot ID   A0AB39JAQ8
Organism   Bacillus altitudinis strain RS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1582121..1593023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS08120 (RZ534_08120) - 1582793..1584523 (+) 1731 WP_317329136.1 glycosyltransferase -
  RZ534_RS08125 (RZ534_08125) - 1584520..1584795 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  RZ534_RS08130 (RZ534_08130) sucC 1584972..1586132 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  RZ534_RS08135 (RZ534_08135) sucD 1586155..1587057 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  RZ534_RS08140 (RZ534_08140) dprA 1587121..1588023 (+) 903 WP_008344822.1 DNA-processing protein DprA Machinery gene
  RZ534_RS08145 (RZ534_08145) topA 1588218..1590293 (+) 2076 WP_317329140.1 type I DNA topoisomerase -
  RZ534_RS08150 (RZ534_08150) trmFO 1590364..1591668 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RZ534_RS08155 (RZ534_08155) xerC 1591731..1592648 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34073.43 Da        Isoelectric Point: 8.2776

>NTDB_id=892131 RZ534_RS08140 WP_008344822.1 1587121..1588023(+) (dprA) [Bacillus altitudinis strain RS1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPTSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=892131 RZ534_RS08140 WP_008344822.1 1587121..1588023(+) (dprA) [Bacillus altitudinis strain RS1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCAACCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGTTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTTCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38
  dprA Legionella pneumophila strain ERS1305867

37.049

100

0.377