Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RY972_RS03610 Genome accession   NZ_CP136584
Coordinates   750709..751029 (-) Length   106 a.a.
NCBI ID   WP_317104258.1    Uniprot ID   -
Organism   Aeromonas allosaccharophila strain BIM B-1809     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745709..756029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY972_RS03590 (RY972_03590) - 746047..746745 (-) 699 WP_317104257.1 DnaT-like ssDNA-binding domain-containing protein -
  RY972_RS03595 (RY972_03595) - 747044..748015 (+) 972 WP_317103424.1 response regulator -
  RY972_RS03600 (RY972_03600) - 748091..749488 (-) 1398 WP_058053047.1 peptide MFS transporter -
  RY972_RS03605 (RY972_03605) galU 749702..750613 (-) 912 WP_042656815.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RY972_RS03610 (RY972_03610) comEA/comE1 750709..751029 (-) 321 WP_317104258.1 ComEA family DNA-binding protein Machinery gene
  RY972_RS03615 (RY972_03615) pta 751409..753589 (-) 2181 WP_042059882.1 phosphate acetyltransferase -
  RY972_RS03620 (RY972_03620) - 753646..754848 (-) 1203 WP_317103425.1 acetate kinase -
  RY972_RS03625 (RY972_03625) yfbV 755153..755593 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11214.21 Da        Isoelectric Point: 9.9853

>NTDB_id=891737 RY972_RS03610 WP_317104258.1 750709..751029(-) (comEA/comE1) [Aeromonas allosaccharophila strain BIM B-1809]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKQTTTATVAKEGGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=891737 RY972_RS03610 WP_317104258.1 750709..751029(-) (comEA/comE1) [Aeromonas allosaccharophila strain BIM B-1809]
ATGCTGATGAAGAAACTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCGGATAA
AGCTGCGCCCAAGCAAACCACCACAGCCACAGTCGCCAAGGAGGGTGGCAAACTGAATATCAATACCGCCACCCTTGCTG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGTCCGGCCACGCTGGAAGCCAACAGGGATATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

48.571

99.057

0.481
  comEA Vibrio cholerae C6706

48.571

99.057

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

45.455

93.396

0.425
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Vibrio campbellii strain DS40M4

37.143

99.057

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368