Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RVY74_RS25155 Genome accession   NZ_CP136372
Coordinates   4843316..4843897 (+) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus mycoides strain PAMC 29434     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4838316..4848897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS25120 (RVY74_25120) - 4839299..4839505 (+) 207 WP_000216167.1 DUF1657 domain-containing protein -
  RVY74_RS25125 (RVY74_25125) - 4839612..4840100 (+) 489 WP_201063993.1 YhcN/YlaJ family sporulation lipoprotein -
  RVY74_RS25130 (RVY74_25130) spoVAC 4840129..4840605 (+) 477 WP_002034730.1 stage V sporulation protein AC -
  RVY74_RS25135 (RVY74_25135) spoVAD 4840606..4841622 (+) 1017 WP_000938981.1 stage V sporulation protein AD -
  RVY74_RS25140 (RVY74_25140) spoVAE 4841619..4841969 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  RVY74_RS25145 (RVY74_25145) - 4841979..4842185 (+) 207 WP_002034728.1 DUF1657 domain-containing protein -
  RVY74_RS25150 (RVY74_25150) - 4842206..4843075 (+) 870 WP_201063991.1 DUF421 domain-containing protein -
  RVY74_RS25155 (RVY74_25155) clpP 4843316..4843897 (+) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RVY74_RS25160 (RVY74_25160) - 4844423..4844671 (-) 249 WP_002016081.1 HPr family phosphocarrier protein -
  RVY74_RS25165 (RVY74_25165) whiA 4844695..4845645 (-) 951 WP_002016082.1 DNA-binding protein WhiA -
  RVY74_RS25170 (RVY74_25170) yvcK 4845734..4846687 (-) 954 WP_201063986.1 YvcK family protein -
  RVY74_RS25175 (RVY74_25175) rapZ 4846691..4847572 (-) 882 WP_002016084.1 RNase adapter RapZ -
  RVY74_RS25180 (RVY74_25180) - 4847593..4848051 (-) 459 WP_002124062.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=890421 RVY74_RS25155 WP_001049163.1 4843316..4843897(+) (clpP) [Bacillus mycoides strain PAMC 29434]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=890421 RVY74_RS25155 WP_001049163.1 4843316..4843897(+) (clpP) [Bacillus mycoides strain PAMC 29434]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAGGA
TCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATTTACATCAACAGCCCTGGTGGTTCTATCACAGCTGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTACGCACTTCCAAACAGTGAAGTTATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTTCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554