Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RS399_RS14555 Genome accession   NZ_CP135973
Coordinates   2924826..2925422 (-) Length   198 a.a.
NCBI ID   WP_003219849.1    Uniprot ID   A0A9W5LL57
Organism   Bacillus inaquosorum strain SI3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2919826..2930422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS14540 (RS399_14540) - 2920130..2922403 (+) 2274 WP_084993498.1 glycoside hydrolase family 65 protein -
  RS399_RS14545 (RS399_14545) - 2922396..2924081 (+) 1686 WP_084993496.1 alpha-glucosidase -
  RS399_RS14550 (RS399_14550) pgmB 2924078..2924752 (+) 675 WP_084993494.1 beta-phosphoglucomutase -
  RS399_RS14555 (RS399_14555) clpP 2924826..2925422 (-) 597 WP_003219849.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RS399_RS14565 (RS399_14565) - 2925920..2926432 (+) 513 WP_019259546.1 DUF3231 family protein -
  RS399_RS14570 (RS399_14570) - 2926474..2926788 (-) 315 WP_019259545.1 multidrug efflux SMR transporter -
  RS399_RS14575 (RS399_14575) - 2926788..2927123 (-) 336 WP_019259544.1 multidrug efflux SMR transporter -
  RS399_RS14580 (RS399_14580) - 2927205..2927789 (-) 585 WP_084993492.1 TetR family transcriptional regulator -
  RS399_RS14585 (RS399_14585) aspP 2927884..2929446 (-) 1563 WP_019259542.1 aspartate/proton symporter AspP -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21873.14 Da        Isoelectric Point: 4.7114

>NTDB_id=888031 RS399_RS14555 WP_003219849.1 2924826..2925422(-) (clpP) [Bacillus inaquosorum strain SI3]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=888031 RS399_RS14555 WP_003219849.1 2924826..2925422(-) (clpP) [Bacillus inaquosorum strain SI3]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCAAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCATTCCTGCTTGCTGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCACAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATCCTGACTCGCAACACAGAAGAACAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.465

100

0.965
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

57.732

97.98

0.566
  clpP Streptococcus pneumoniae D39

57.732

97.98

0.566
  clpP Streptococcus pneumoniae R6

57.732

97.98

0.566
  clpP Streptococcus pneumoniae TIGR4

57.732

97.98

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54