Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RRX38_RS18205 Genome accession   NZ_CP135971
Coordinates   4182411..4184588 (+) Length   725 a.a.
NCBI ID   WP_315960166.1    Uniprot ID   -
Organism   Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4177411..4189588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRX38_RS18185 (RRX38_18185) comM 4179595..4180659 (+) 1065 WP_295471691.1 pilus assembly protein PilM Machinery gene
  RRX38_RS18190 (RRX38_18190) - 4180659..4181219 (+) 561 WP_295471689.1 PilN domain-containing protein -
  RRX38_RS18195 (RRX38_18195) pilO 4181273..4181839 (+) 567 WP_410524919.1 type 4a pilus biogenesis protein PilO -
  RRX38_RS18200 (RRX38_18200) pilP 4181836..4182363 (+) 528 WP_295471683.1 type 4a pilus biogenesis lipoprotein PilP -
  RRX38_RS18205 (RRX38_18205) pilQ 4182411..4184588 (+) 2178 WP_315960166.1 type IV pilus secretin PilQ Machinery gene
  RRX38_RS18210 (RRX38_18210) aroK 4184593..4185111 (+) 519 WP_295471678.1 shikimate kinase AroK -
  RRX38_RS18215 (RRX38_18215) aroB 4185229..4186332 (+) 1104 WP_315960167.1 3-dehydroquinate synthase -
  RRX38_RS18220 (RRX38_18220) - 4186344..4187972 (+) 1629 WP_315960168.1 AAA family ATPase -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78006.36 Da        Isoelectric Point: 5.1920

>NTDB_id=887978 RRX38_RS18205 WP_315960166.1 4182411..4184588(+) (pilQ) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
MTRILSTLVVSLWMAMLAPWLQAASLKTLDVATLPGDRIELKLSFDSPVPAPRGYTTEQPARIALDLPGVNTQLANRSRD
LGSGNARSVVVVQAKDRTRVIVNLTTLAPYSTRVEGNNLFVVIGQGAAAAQASQPTTAAPVATAPAATRNTPRAAQPSAA
PAAPRISVPAGAKAVRNLDFQRGELGEGNVLIDLSSAAIAPDIQERNGKIFVEFAKTQLPDPLRVRLDVKDFATPVQFVT
ATTSGDKTSISIEPSGPYDYSAYQTDNRLTISVRPLTNQDLERRAADKPVYTGEKLSLNFQDIDVRSVLQLIADFTNLNL
VASDTVQGGITLRLQNVPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAK
AADIAKLFQSVTSAEAQAEERGSITVDERTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKALGVRW
GGSRTSGNWTTYGLDDNLTSSSTSGGSSTINDGGSTGTGTSSTTSTRNIPFVDLGAPSATSGFGIGFVTNNTLIDLELSA
MEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQESSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLN
AVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVEKVPFLGDVPYVGRLFRRDVVSDSKSELLVFLTPRIMNNQA
IAVGR

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=887978 RRX38_RS18205 WP_315960166.1 4182411..4184588(+) (pilQ) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
ATGACCCGGATTCTTTCGACCCTCGTCGTATCGCTTTGGATGGCGATGCTGGCACCCTGGCTTCAGGCTGCCAGCCTCAA
GACCCTGGACGTCGCCACGCTGCCGGGTGACCGTATCGAGCTGAAGCTATCGTTCGACTCCCCCGTACCTGCCCCGCGTG
GCTACACCACCGAGCAGCCGGCGCGTATCGCCCTCGACCTGCCCGGCGTGAATACCCAGCTGGCCAATCGCAGTCGTGAC
CTGGGCAGTGGCAATGCCCGCAGCGTGGTCGTGGTGCAGGCCAAGGATCGCACCCGGGTCATCGTCAACCTCACCACCCT
GGCGCCGTACAGCACCCGGGTCGAAGGCAACAACCTGTTCGTGGTGATCGGCCAGGGCGCTGCCGCCGCGCAGGCCTCGC
AACCTACCACGGCAGCACCTGTCGCCACTGCACCTGCCGCGACACGCAACACCCCGCGTGCCGCCCAGCCGTCAGCCGCT
CCGGCTGCCCCGCGCATCAGCGTCCCGGCGGGAGCCAAGGCGGTGCGCAACCTGGACTTCCAGCGCGGTGAGCTGGGTGA
AGGCAATGTACTCATCGACCTCAGCAGCGCAGCCATCGCACCGGACATTCAGGAGCGCAATGGCAAGATCTTCGTCGAGT
TCGCCAAGACCCAGCTGCCCGACCCGCTGCGCGTACGCCTGGATGTGAAGGACTTCGCCACCCCAGTGCAGTTCGTCACT
GCCACCACCTCCGGTGACAAGACCAGCATCAGCATCGAGCCTTCCGGTCCCTATGACTACTCCGCCTACCAGACCGACAA
CCGCCTGACCATCAGCGTGCGGCCCCTGACCAATCAGGACCTGGAGCGGCGCGCGGCCGACAAGCCGGTGTACACCGGCG
AGAAACTGTCGCTGAACTTCCAGGACATCGACGTGCGCTCGGTGCTGCAACTGATCGCCGACTTCACCAACCTCAACCTG
GTCGCCAGCGACACGGTGCAGGGCGGTATCACCCTGCGCCTGCAGAATGTGCCGTGGGACCAGGCGCTGGACCTGGTGCT
CAAGACCAAGGGTCTGGACAAGCGCAAGATCGGTAACGTGCTGCTGGTGGCGCCGGCTGACGAAATCGCCGCCCGTGAGC
GCCAGGAACTCGAATCGCAGAAGCAGATCGCCGAACTGGCGCCGCTGCGTCGTGAACTGCTGCAGGTCAACTACGCCAAG
GCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGCGCCGAGGCCCAGGCCGAAGAGCGCGGCTCCATCACCGTGGA
CGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGAACGTCTGGACGAGCTGCGCCGCATCGTCGCGCAACTGGACA
TTCCGGTTCGTCAGGTGATGATCGAGGCGCGCATCGTCGAGGCCAACGTCGATTACGACAAGGCGCTGGGGGTGCGTTGG
GGCGGCAGCCGGACCAGTGGCAATTGGACGACCTACGGTCTGGACGACAATCTCACTTCGAGCAGTACCAGTGGTGGCAG
CTCCACGATCAACGACGGCGGATCCACCGGGACCGGCACCAGTTCGACCACCTCGACCCGCAATATCCCCTTCGTCGACC
TTGGTGCACCCAGCGCGACGTCTGGTTTTGGCATCGGCTTCGTCACCAACAACACCCTGATCGACCTCGAACTCAGTGCC
ATGGAAAAGACCGGCAACGGCGAGATCGTCTCGCAGCCCAAGGTGGTGACCAGCGACAAGGAAACCGCCAAGATCCTCAA
GGGCACCGAGATTCCGTACCAGGAGTCCAGCTCCAGCGGTGCGACCACGGTCAGCTTCAAGGAAGCCTCGCTGTCGCTGG
AGGTGACTCCGCAGATCACTCCGGACAACCGCATCATCATGGAGGTGAAGGTCACCAAGGACGAGCCTGACTACCTCAAC
GCGGTGCTCGGCGTACCGCCGATCAAGAAGAACGAGGTCAATGCCAAGGTGCTGATTTCCGATGGCGAGACCATCGTGAT
CGGCGGGGTGTTCTCCAATACGCAAAGTAAAGTTGTAGAAAAAGTGCCATTTCTTGGCGATGTGCCGTATGTTGGCCGCC
TTTTCAGGCGTGACGTGGTGTCCGATTCCAAATCCGAGCTGTTGGTCTTCCTGACACCGCGCATCATGAACAACCAGGCG
ATTGCTGTAGGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(319-365)

AMIN domain (AMIN)

(37-122)

Bacterial type II and III secretion system protein (Secretin)

(560-716)

Bacterial type II/III secretion system short domain (Secretin_N)

(393-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.466

100

0.73
  comQ Acinetobacter baylyi ADP1

41.307

99.172

0.41
  pilQ Acinetobacter baumannii strain A118

38.718

100

0.4
  pilQ Acinetobacter baumannii D1279779

38.718

100

0.4
  pilQ Legionella pneumophila strain ERS1305867

37.074

97.103

0.36
  pilQ Legionella pneumophila strain Lp02

37.074

97.103

0.36