Detailed information NTG0887977

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RRX38_RS18185
• Genome accession: NZ_CP135971
• Coordinates: 4179595..4180659 (+)
• Length: 354 a.a.
• NCBI ID: WP_295471691.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4174595..4185659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RRX38_RS18175 (RRX38_18175)	-	4175544..4176812 (+)	1269	WP_295471696.1	malic enzyme-like NAD(P)-binding protein	-
RRX38_RS18180 (RRX38_18180)	-	4176949..4179387 (-)	2439	WP_410524918.1	penicillin-binding protein 1A	-
RRX38_RS18185 (RRX38_18185)	comM	4179595..4180659 (+)	1065	WP_295471691.1	pilus assembly protein PilM	Machinery gene
RRX38_RS18190 (RRX38_18190)	-	4180659..4181219 (+)	561	WP_295471689.1	PilN domain-containing protein	-
RRX38_RS18195 (RRX38_18195)	pilO	4181273..4181839 (+)	567	WP_410524919.1	type 4a pilus biogenesis protein PilO	-
RRX38_RS18200 (RRX38_18200)	pilP	4181836..4182363 (+)	528	WP_295471683.1	type 4a pilus biogenesis lipoprotein PilP	-
RRX38_RS18205 (RRX38_18205)	pilQ	4182411..4184588 (+)	2178	WP_315960166.1	type IV pilus secretin PilQ	Machinery gene
RRX38_RS18210 (RRX38_18210)	aroK	4184593..4185111 (+)	519	WP_295471678.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38045.73 Da
• Isoelectric Point: 4.8380

>NTDB_id=887977 RRX38_RS18185 WP_295471691.1 4179595..4180659(+) (comM) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
MFELFGKKAHTLLGIDISSTAVKLLELSRSGSRFKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLVKARTQARNAAV
AVAGSAVITKVVEMDAGLSDDDMENQLRLEADQYIPYPLEEVAIDFEVQGYSVRNPERVEVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERAFTLLSAQLGKGHEMLTVAVVDIGATMTTLSVLHQGRIIYTREQLFGGKQLTEEIQRRYGLSM
GEAGLAKKQGGLPDDYNSEVLEPFKEAMVQQVSRSLQFFFAAGQYNGVDYIMLAGGSASIAGLENLIHKRLGVPTMVANP
FADMALSSKVNAGALASDAPALMVACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=887977 RRX38_RS18185 WP_295471691.1 4179595..4180659(+) (comM) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
GTGTTCGAACTCTTCGGAAAGAAGGCCCATACCCTTCTAGGGATCGATATTAGCTCTACGGCGGTAAAGCTCCTTGAACT
GAGTCGTTCCGGCAGCCGTTTCAAAGTCGAGTCCTATGCGGTCGAACCCTTGCCCGCCAATGCCGTGGTCGAGAAGAACA
TCGCCGAGCTGGAGGGCGTGGGGCAGGCCCTGAGCCGCGTGCTGGTCAAGGCCCGCACCCAGGCCCGCAACGCGGCCGTG
GCGGTGGCCGGTTCGGCGGTGATCACCAAAGTGGTGGAAATGGATGCCGGGCTGTCGGACGACGACATGGAGAACCAGCT
GCGGCTCGAGGCCGACCAGTACATTCCCTACCCGCTCGAAGAGGTCGCCATCGATTTCGAGGTGCAGGGCTATTCGGTGC
GCAATCCCGAGCGCGTCGAAGTGCTGCTGGCGGCCTGTCGCAAGGAGAACGTCGAGGTCCGTGAGGCGGCGCTGGCCCTG
GCCGGTCTCACTGCCAAGGTCGTCGACGTGGAAGCCTATGCCCTGGAGCGCGCCTTCACCCTGTTGTCTGCACAGCTGGG
CAAGGGACATGAAATGCTCACCGTCGCCGTGGTGGATATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACCAGGGAC
GCATCATCTATACCCGCGAGCAGCTGTTCGGTGGCAAGCAGCTGACCGAGGAAATCCAGCGTCGCTACGGCCTGTCGATG
GGCGAAGCCGGTCTGGCCAAGAAACAGGGCGGCCTGCCCGACGACTACAACAGCGAGGTGCTGGAGCCCTTCAAGGAGGC
GATGGTCCAGCAGGTGTCGCGTTCCTTGCAGTTCTTCTTCGCTGCCGGGCAGTACAACGGCGTGGACTACATCATGCTGG
CCGGCGGCTCGGCCTCGATCGCCGGTCTCGAAAACCTGATCCACAAGCGCCTGGGCGTGCCGACCATGGTGGCCAACCCT
TTCGCCGACATGGCCCTGAGTTCCAAGGTCAATGCCGGTGCACTGGCCAGTGATGCCCCGGCACTGATGGTCGCCTGCGG
CCTGGCCATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.65	100	0.557
pilM	Acinetobacter baumannii D1279779	55.367	100	0.554
comM	Acinetobacter baylyi ADP1	54.52	100	0.545
pilM	Legionella pneumophila strain ERS1305867	46.328	100	0.463