Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RO483_RS15530 Genome accession   NZ_CP135968
Coordinates   3333137..3334660 (-) Length   507 a.a.
NCBI ID   WP_315956718.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain S10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3328137..3339660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO483_RS15510 (RO483_15510) - 3329427..3330413 (+) 987 WP_005379037.1 serine/threonine protein kinase -
  RO483_RS15515 (RO483_15515) - 3330448..3331050 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  RO483_RS15520 (RO483_15520) - 3331097..3331975 (-) 879 WP_213962121.1 acyltransferase -
  RO483_RS15525 (RO483_15525) - 3332125..3333081 (+) 957 WP_005379034.1 DUF2860 domain-containing protein -
  RO483_RS15530 (RO483_15530) comM 3333137..3334660 (-) 1524 WP_315956718.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RO483_RS15535 (RO483_15535) ilvG 3335126..3336772 (+) 1647 WP_005378960.1 acetolactate synthase 2 catalytic subunit -
  RO483_RS15540 (RO483_15540) ilvM 3336784..3337068 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  RO483_RS15545 (RO483_15545) ilvE 3337081..3338019 (+) 939 WP_145533240.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55008.08 Da        Isoelectric Point: 8.7823

>NTDB_id=887944 RO483_RS15530 WP_315956718.1 3333137..3334660(-) (comM) [Vibrio alginolyticus strain S10]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIERHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=887944 RO483_RS15530 WP_315956718.1 3333137..3334660(-) (comM) [Vibrio alginolyticus strain S10]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGGCGT
TTTGATCTTCCTATTGCATTGGGAATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCGTTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTGAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGCGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGTTTCCAATTAGTTGGAGCATTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCATAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCATC
GTTTAGGGCTCTCGATTCGTGCATATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCCGAGGCGCTTGGGTATCGAGCGATGGACCGTTTGCTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

99.803

0.434