Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCU87_RS12225 Genome accession   NZ_AP024850
Coordinates   2630854..2631138 (-) Length   94 a.a.
NCBI ID   WP_094955912.1    Uniprot ID   -
Organism   Photobacterium sanguinicancri strain CECT 7579     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625854..2636138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU87_RS12195 yfbR 2626761..2627345 (+) 585 WP_261857256.1 5'-deoxynucleotidase -
  OCU87_RS12200 - 2627345..2628712 (+) 1368 WP_062690958.1 anti-phage deoxyguanosine triphosphatase -
  OCU87_RS12205 - 2628767..2629387 (-) 621 WP_261857257.1 tRNA-uridine aminocarboxypropyltransferase -
  OCU87_RS12210 rrtA 2629397..2629975 (+) 579 WP_261857258.1 rhombosortase -
  OCU87_RS12215 - 2630074..2630412 (+) 339 WP_261857259.1 DUF1971 domain-containing protein -
  OCU87_RS12220 - 2630499..2630744 (+) 246 WP_261857260.1 hypothetical protein -
  OCU87_RS12225 comEA 2630854..2631138 (-) 285 WP_094955912.1 helix-hairpin-helix domain-containing protein Machinery gene
  OCU87_RS12230 ppiD 2631275..2633167 (-) 1893 WP_261857261.1 peptidylprolyl isomerase -
  OCU87_RS12235 hupB 2633361..2633633 (-) 273 WP_048899106.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10128.59 Da        Isoelectric Point: 4.6510

>NTDB_id=88779 OCU87_RS12225 WP_094955912.1 2630854..2631138(-) (comEA) [Photobacterium sanguinicancri strain CECT 7579]
MKRLLISIFLCGAALVASPASANDSHDGIEITININDANAEELDKLLIGIGPEKAESIILYRNEHGEFQTADELAGVKGI
GLATVEKNRERIKL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=88779 OCU87_RS12225 WP_094955912.1 2630854..2631138(-) (comEA) [Photobacterium sanguinicancri strain CECT 7579]
ATGAAACGATTGCTGATAAGTATATTTCTCTGCGGTGCTGCTTTAGTTGCATCACCAGCAAGCGCTAACGATAGTCATGA
TGGCATCGAAATTACCATCAACATAAATGATGCAAATGCTGAAGAGTTGGATAAGTTATTGATTGGTATCGGCCCTGAAA
AAGCCGAGAGTATAATCCTTTACCGAAATGAGCATGGTGAGTTTCAAACGGCAGATGAACTGGCAGGCGTGAAAGGTATT
GGTTTAGCGACTGTTGAGAAAAATCGTGAGCGAATAAAACTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

51.579

100

0.521
  comEA Vibrio parahaemolyticus RIMD 2210633

50

100

0.5
  comE1/comEA Haemophilus influenzae Rd KW20

41.818

100

0.489
  comEA Vibrio cholerae C6706

47.872

100

0.479
  comEA Vibrio cholerae strain A1552

47.872

100

0.479
  comEA Legionella pneumophila str. Paris

38.384

100

0.404
  comEA Legionella pneumophila strain ERS1305867

38.384

100

0.404
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.043

97.872

0.372

Multiple sequence alignment