Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RJT70_RS15880 Genome accession   NZ_CP135059
Coordinates   3512695..3513954 (+) Length   419 a.a.
NCBI ID   WP_014504324.1    Uniprot ID   G7TE90
Organism   Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507695..3518954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT70_RS15860 - 3508055..3509581 (-) 1527 WP_044749930.1 membrane protein -
  RJT70_RS15865 - 3509551..3510180 (-) 630 WP_353849115.1 hypothetical protein -
  RJT70_RS15870 - 3510191..3511780 (-) 1590 WP_353849116.1 phosphoethanolamine transferase -
  RJT70_RS15875 pilA2 3511916..3512341 (-) 426 WP_047340102.1 pilin Machinery gene
  RJT70_RS15880 pilC 3512695..3513954 (+) 1260 WP_014504324.1 type II secretion system F family protein Machinery gene
  RJT70_RS15885 - 3513961..3514824 (+) 864 WP_047340103.1 A24 family peptidase -
  RJT70_RS15890 coaE 3514838..3515446 (+) 609 WP_014504326.1 dephospho-CoA kinase -
  RJT70_RS15895 - 3515510..3516545 (+) 1036 WP_353849117.1 IS5 family transposase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46112.66 Da        Isoelectric Point: 10.2301

>NTDB_id=884596 RJT70_RS15880 WP_014504324.1 3512695..3513954(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931]
MSVARSAIKKQPVDRNTSMLQTFMWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=884596 RJT70_RS15880 WP_014504324.1 3512695..3513954(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATGTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7TE90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baylyi ADP1

50.617

96.659

0.489
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

43.108

95.227

0.411
  pilG Neisseria meningitidis 44/76-A

42.5

95.465

0.406
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37