Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AACG38_RS08220 Genome accession   NZ_CP151045
Coordinates   1703676..1704305 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 20KM0223N     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698676..1709305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG38_RS08200 ycbZ 1699077..1700837 (-) 1761 WP_000156526.1 Lon protease family protein -
  AACG38_RS08205 matP 1701023..1701475 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AACG38_RS08210 ompA 1701551..1702591 (-) 1041 WP_000750416.1 porin OmpA -
  AACG38_RS08215 sulA 1702948..1703457 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AACG38_RS08220 sxy/tfoX 1703676..1704305 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AACG38_RS08225 yccS 1704268..1706430 (-) 2163 WP_000875020.1 YccS family putative transporter -
  AACG38_RS08230 yccF 1706440..1706886 (-) 447 WP_001261231.1 YccF domain-containing protein -
  AACG38_RS08235 helD 1707009..1709063 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=882805 AACG38_RS08220 WP_000839153.1 1703676..1704305(+) (sxy/tfoX) [Escherichia coli strain 20KM0223N]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=882805 AACG38_RS08220 WP_000839153.1 1703676..1704305(+) (sxy/tfoX) [Escherichia coli strain 20KM0223N]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1