Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RKQ58_RS02410 Genome accession   NZ_CP134579
Coordinates   311945..314071 (+) Length   708 a.a.
NCBI ID   WP_272376894.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306945..319071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02390 (RKQ58_02390) pilM 308909..309967 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ58_RS02395 (RKQ58_02395) - 309967..310569 (+) 603 Protein_284 PilN domain-containing protein -
  RKQ58_RS02400 (RKQ58_02400) pilO 310604..311344 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ58_RS02405 (RKQ58_02405) pilP 311355..311882 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  RKQ58_RS02410 (RKQ58_02410) pilQ 311945..314071 (+) 2127 WP_272376894.1 type IV pilus secretin PilQ Machinery gene
  RKQ58_RS02415 (RKQ58_02415) aroK 314083..314652 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ58_RS02420 (RKQ58_02420) aroB 314681..315763 (+) 1083 WP_004745380.1 3-dehydroquinate synthase -
  RKQ58_RS02425 (RKQ58_02425) - 315779..316654 (+) 876 WP_000218798.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76608.16 Da        Isoelectric Point: 7.3160

>NTDB_id=881731 RKQ58_RS02410 WP_272376894.1 311945..314071(+) (pilQ) [Acinetobacter baumannii strain XH1034]
MNHVFRQFSMGTVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRIVFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKSPPDKSASSSYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRMSYAKAVDVLKLIEDSRDAKGAAANRTANSDALALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTKNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=881731 RKQ58_RS02410 WP_272376894.1 311945..314071(+) (pilQ) [Acinetobacter baumannii strain XH1034]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGACAGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAATCGTGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATCCTTGATTTTGATAAGGCACAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCTAGTTCTGTAGATGTTACTTCAGATGACCAGCGTTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTAGAAGGTAATACCTTTATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAACGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAAGGCAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATTCCGACACATTTAGCACGTCGCTTAAATGTAAATGATTTTGCAACCCCGGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGCTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACGATC
AGTTTAAAAAGCCCACCAGATAAAAGTGCGTCATCTTCATATAAGGCACCAAGTTATTCAGGGAATAAACTTTCCTTAGA
CTTCCAGGATATTGAAGTTCGTAGGGTTCTGCAGTTACTGGCTGATTTTACAGGCATTAATATGGTAGCTGCTGATAGTG
TACAAGGTAATATCACATTACGTTTAAAAGATGTGCCTTGGGATCAGGCCCTTGATATTATTTTAAAAACTAAAAATCTC
GATAAACGACGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATTAAAGCTGAGGATGATCAGGCAAAAGC
TTTAGCGCAAACTATTAAGTTGGCACCGATACAAACAGATTATATTCGGATGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTAATCGAAGATTCTCGTGATGCAAAAGGGGCGGCCGCAAACCGTACCGCTAATTCAGATGCTCTTGCTTTAGAGAGT
TTGCTGAGCTCTCGTGGTAGTGCGGTTGCTGACACACGTACCAATACCTTAATTGTAAATGATACGGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAGTTGCTTGATGTGCAAGTTAAACAGGTCATGGTTGAGGCACGTATTGTGAGAGCTTCTA
CGTCATTTACGAAAGAGCTTGGGGTGAAGTGGGGTATTCTTTCACAAGGTATTACCAATAATAAAAACTTATTGGTTGGC
GGGAGTGAAACAACCTTATGGAATTTACGTGAGCCGAAGAAAGATGAAACTACGGGAGGCTATAAATATACGATTGAGCG
TCCAGATAACTTAAACGTGGATTTAGGGGTCACTAATCCCGCAGGAAGTATCGCTTTCGGCTTAATTAGTATGTCTGACT
TTATGTTGGATCTTGAATTGTCTGCTTTACAAGCCGATGGTTATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCC
GATAAACAAACTGCGAAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACCACTTCTGGTGCTGGATCTACAGC
AACGACATCATTTAAAGATGCACTCTTAAGTCTTGATGTGACCCCGAGTATTACACCTGATGGCAAAATTCAAATGAAGT
TGGATATTTCTAAGGACTCTATAGCAGGTGAAGCGCCTAATGGCGAGTTGATTCTGAATAAGAATAATATCAATACCAAT
GTATTGGTAGATAATGGCGAAACTGTCATTTTAGGTGGAGTATTTGAGCAGACAACAAAGAATTCACAAACCAAAGTTCC
TTTCTTTGGTGATATTCCTGTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTT
TCGTTACACCACGAATTGTTAATGACACTTTAGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

88.904

100

0.905
  pilQ Acinetobacter baumannii strain A118

88.766

100

0.904
  comQ Acinetobacter baylyi ADP1

72.689

100

0.733
  pilQ Pseudomonas aeruginosa PAK

39.658

99.011

0.393