Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RKQ58_RS02405 Genome accession   NZ_CP134579
Coordinates   311355..311882 (+) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306355..316882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02390 (RKQ58_02390) pilM 308909..309967 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ58_RS02395 (RKQ58_02395) - 309967..310569 (+) 603 Protein_284 PilN domain-containing protein -
  RKQ58_RS02400 (RKQ58_02400) pilO 310604..311344 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ58_RS02405 (RKQ58_02405) pilP 311355..311882 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  RKQ58_RS02410 (RKQ58_02410) pilQ 311945..314071 (+) 2127 WP_272376894.1 type IV pilus secretin PilQ Machinery gene
  RKQ58_RS02415 (RKQ58_02415) aroK 314083..314652 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ58_RS02420 (RKQ58_02420) aroB 314681..315763 (+) 1083 WP_004745380.1 3-dehydroquinate synthase -
  RKQ58_RS02425 (RKQ58_02425) - 315779..316654 (+) 876 WP_000218798.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=881730 RKQ58_RS02405 WP_000695059.1 311355..311882(+) (pilP) [Acinetobacter baumannii strain XH1034]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=881730 RKQ58_RS02405 WP_000695059.1 311355..311882(+) (pilP) [Acinetobacter baumannii strain XH1034]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714