Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RKQ58_RS02400 Genome accession   NZ_CP134579
Coordinates   310604..311344 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305604..316344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02385 (RKQ58_02385) ponA 306192..308747 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  RKQ58_RS02390 (RKQ58_02390) pilM 308909..309967 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ58_RS02395 (RKQ58_02395) - 309967..310569 (+) 603 Protein_284 PilN domain-containing protein -
  RKQ58_RS02400 (RKQ58_02400) pilO 310604..311344 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ58_RS02405 (RKQ58_02405) pilP 311355..311882 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  RKQ58_RS02410 (RKQ58_02410) pilQ 311945..314071 (+) 2127 WP_272376894.1 type IV pilus secretin PilQ Machinery gene
  RKQ58_RS02415 (RKQ58_02415) aroK 314083..314652 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ58_RS02420 (RKQ58_02420) aroB 314681..315763 (+) 1083 WP_004745380.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=881729 RKQ58_RS02400 WP_000076101.1 310604..311344(+) (pilO) [Acinetobacter baumannii strain XH1034]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=881729 RKQ58_RS02400 WP_000076101.1 310604..311344(+) (pilO) [Acinetobacter baumannii strain XH1034]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683