Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   RJW51_RS09560 Genome accession   NZ_CP134491
Coordinates   1880642..1881346 (+) Length   234 a.a.
NCBI ID   WP_024391260.1    Uniprot ID   A0A9X4MIJ1
Organism   Streptococcus parasuis strain 1628469     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875642..1886346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS09540 (RJW51_09525) - 1877454..1878113 (-) 660 WP_024396179.1 amino acid ABC transporter permease -
  RJW51_RS09545 (RJW51_09530) - 1878128..1878826 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  RJW51_RS09550 (RJW51_09535) - 1878841..1879680 (-) 840 WP_024396181.1 transporter substrate-binding domain-containing protein -
  RJW51_RS09555 (RJW51_09540) - 1879690..1880451 (-) 762 WP_172089399.1 ATP-binding cassette domain-containing protein -
  RJW51_RS09560 (RJW51_09545) micA 1880642..1881346 (+) 705 WP_024391260.1 response regulator YycF Regulator
  RJW51_RS09565 (RJW51_09550) micB 1881339..1882688 (+) 1350 WP_024391261.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW51_RS09570 (RJW51_09555) vicX 1882695..1883498 (+) 804 WP_024391262.1 MBL fold metallo-hydrolase Regulator
  RJW51_RS09575 (RJW51_09560) pbp2b 1883817..1885850 (+) 2034 WP_194283681.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26727.72 Da        Isoelectric Point: 4.8061

>NTDB_id=880398 RJW51_RS09560 WP_024391260.1 1880642..1881346(+) (micA) [Streptococcus parasuis strain 1628469]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALDIFEAEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQGAVESSGTPELVIGDLVIVPDAFVAKKHGKELELT
HREFELLYHLAKHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYFIKAYD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=880398 RJW51_RS09560 WP_024391260.1 1880642..1881346(+) (micA) [Streptococcus parasuis strain 1628469]
ATGAAGAAAATTTTAATTGTTGATGATGAGAAACCAATCTCGGATATTATTAAGTTCAATATGACACGTGAAGGATATGA
GGTAGTCACTGCGTTTGATGGACGTGAGGCGCTTGATATTTTTGAAGCAGAGTTTCCAGACATTGTTATTTTAGATTTAA
TGCTTCCAGAAATAGATGGATTAGAAGTAGCACGGACGATTCGAAAAACAAGTAATGTTCCTATTTTAATGTTGTCAGCT
AAAGATAGTGAGTTTGATAAAGTTATTGGGCTTGAAATTGGTGCAGATGACTATGTGACAAAGCCATTCTCAAACCGTGA
ATTACAGGCGCGTGTTAAAGCTCTTCTTCGTCGAAGTGAATTGGCTGAGACGCAAGGAGCAGTTGAATCATCTGGTACTC
CAGAATTGGTAATCGGTGATTTGGTCATTGTTCCAGATGCTTTTGTAGCTAAGAAACATGGAAAAGAACTTGAACTAACA
CACCGTGAATTTGAATTATTGTATCATTTGGCCAAGCACATTGGGCAAGTCATGACGCGAGAGCATCTACTTGAGACTGT
TTGGGGATATGATTATTTTGGAGATGTACGTACTGTGGATGTGACAGTACGACGCTTGCGTGAAAAAATTGAAGACACTC
CAAGTCGTCCGGAATATATCTTGACACGCAGGGGAGTAGGTTATTTTATAAAAGCTTATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

84.416

98.718

0.833
  vicR Streptococcus mutans UA159

80.851

100

0.812
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.043

98.291

0.423
  scnR Streptococcus mutans UA159

36.709

100

0.372