Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   RJW51_RS09565 Genome accession   NZ_CP134491
Coordinates   1881339..1882688 (+) Length   449 a.a.
NCBI ID   WP_024391261.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1876339..1887688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS09540 (RJW51_09525) - 1877454..1878113 (-) 660 WP_024396179.1 amino acid ABC transporter permease -
  RJW51_RS09545 (RJW51_09530) - 1878128..1878826 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  RJW51_RS09550 (RJW51_09535) - 1878841..1879680 (-) 840 WP_024396181.1 transporter substrate-binding domain-containing protein -
  RJW51_RS09555 (RJW51_09540) - 1879690..1880451 (-) 762 WP_172089399.1 ATP-binding cassette domain-containing protein -
  RJW51_RS09560 (RJW51_09545) micA 1880642..1881346 (+) 705 WP_024391260.1 response regulator YycF Regulator
  RJW51_RS09565 (RJW51_09550) micB 1881339..1882688 (+) 1350 WP_024391261.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW51_RS09570 (RJW51_09555) vicX 1882695..1883498 (+) 804 WP_024391262.1 MBL fold metallo-hydrolase Regulator
  RJW51_RS09575 (RJW51_09560) pbp2b 1883817..1885850 (+) 2034 WP_194283681.1 penicillin-binding protein PBP2B -
  RJW51_RS09580 (RJW51_09565) recR 1885859..1886455 (+) 597 WP_172089398.1 recombination mediator RecR -
  RJW51_RS09585 (RJW51_09570) - 1886564..1887610 (+) 1047 WP_172089397.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51030.35 Da        Isoelectric Point: 4.5705

>NTDB_id=880399 RJW51_RS09565 WP_024391261.1 1881339..1882688(+) (micB) [Streptococcus parasuis strain 1628469]
MINQLRYLITTAEFWFVVILIGFLIALTVLLIENYRDNKQIQLLNKKVGALIDGNYSDVLDLRGSPEITEMANSLNDLSE
VIRLTHDHLEQEKIRLSSILSYMSDGVIATDRIGRIIMVNDMAQKQLGLKDHKQEQYFLLDVLELEDQYSLRELLSQTPE
IVLEKVNENQEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGEMDVELINFTAFVTFILNRFDQMKNSDAGKTYAIIRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGNITFSMKTTDSQLIISISDEGLGIPKADLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWEEVAEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=880399 RJW51_RS09565 WP_024391261.1 1881339..1882688(+) (micB) [Streptococcus parasuis strain 1628469]
ATGATTAATCAATTACGCTATCTAATTACAACAGCTGAATTTTGGTTTGTTGTTATTTTGATTGGCTTTCTAATTGCGTT
GACAGTATTGTTGATAGAAAACTATCGTGACAATAAACAGATACAATTACTCAATAAAAAGGTTGGCGCCTTGATAGATG
GTAATTACTCTGATGTATTGGATTTGCGAGGAAGTCCAGAGATTACTGAAATGGCAAATTCACTGAATGATTTGTCAGAA
GTAATCCGCTTAACGCACGATCATCTAGAACAAGAAAAAATCCGTCTCAGTTCCATTCTTTCCTACATGAGTGATGGAGT
CATTGCTACAGATCGTATTGGCCGAATTATCATGGTCAATGATATGGCGCAGAAACAACTGGGGTTAAAAGATCATAAAC
AGGAGCAATATTTTTTACTTGATGTTCTAGAACTTGAAGACCAATATAGTCTGCGGGAGTTGTTATCCCAAACACCTGAA
ATCGTCTTAGAAAAAGTTAATGAGAATCAAGAATTTCTGACCTTGCGAGCTAATTTTGCAACGATTAGGAGCGAAAGTGG
CCTCATATCAGGTTTGGTTGTTGTCCTACATGATATGACGGAGCAGGCCAAGGAGGAACGTGAGCGCAGACTGTTTGTTT
CTAATGTCAGTCACGAATTGCGTACACCGTTGACTTCGGTTAAATCATATTTGGAAGCCTTGGATGAGGGAGCACTGACC
GAATCGGTTGCCCCAAGTTTTGTCAAGGTATCCTTAGATGAAACCAACCGGATGATGCGGATGATTACAGATCTTTTAAG
TTTATCTCGCATTGATAATCAGGTTGGAGAGATGGATGTAGAGCTAATCAACTTTACGGCTTTTGTCACTTTCATCTTGA
ATCGCTTTGATCAGATGAAGAATTCTGATGCTGGTAAGACCTACGCTATTATTCGTGATTACCAGATTAGTCCAATTTGG
GTTGAAATTGATACCGATAAGATGACGCAGGTACTGGATAATATTTTGAATAATGCTATCAAGTATTCTCCAGATGGGGG
AAATATTACCTTTAGTATGAAAACGACAGATAGTCAGCTAATTATTTCTATTTCAGATGAAGGTTTGGGAATTCCTAAAG
CTGATTTGCCTAAAATATTTGACCGTTTCTATCGAGTAGATAAAGCGCGTTCGAGAGCCCAAGGTGGCACAGGTTTAGGT
TTGGCGATTGCAAAAGAGATTGTAAAGCAACATAAAGGTTTCATTTGGGCTAAAAGTGAGTATGGACATGGTTCGACATT
TACGATTGTCTTACCATATAGTAAGGATATTGCACTGGATGAGTGGGAAGAGGTTGCTGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

68.807

97.105

0.668
  vicK Streptococcus mutans UA159

69.479

89.755

0.624