Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RJW51_RS09570 Genome accession   NZ_CP134491
Coordinates   1882695..1883498 (+) Length   267 a.a.
NCBI ID   WP_024391262.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877695..1888498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS09545 (RJW51_09530) - 1878128..1878826 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  RJW51_RS09550 (RJW51_09535) - 1878841..1879680 (-) 840 WP_024396181.1 transporter substrate-binding domain-containing protein -
  RJW51_RS09555 (RJW51_09540) - 1879690..1880451 (-) 762 WP_172089399.1 ATP-binding cassette domain-containing protein -
  RJW51_RS09560 (RJW51_09545) micA 1880642..1881346 (+) 705 WP_024391260.1 response regulator YycF Regulator
  RJW51_RS09565 (RJW51_09550) micB 1881339..1882688 (+) 1350 WP_024391261.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW51_RS09570 (RJW51_09555) vicX 1882695..1883498 (+) 804 WP_024391262.1 MBL fold metallo-hydrolase Regulator
  RJW51_RS09575 (RJW51_09560) pbp2b 1883817..1885850 (+) 2034 WP_194283681.1 penicillin-binding protein PBP2B -
  RJW51_RS09580 (RJW51_09565) recR 1885859..1886455 (+) 597 WP_172089398.1 recombination mediator RecR -
  RJW51_RS09585 (RJW51_09570) - 1886564..1887610 (+) 1047 WP_172089397.1 D-alanine--D-alanine ligase -
  RJW51_RS09590 (RJW51_09575) - 1887698..1888078 (+) 381 WP_172089396.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29622.64 Da        Isoelectric Point: 5.5483

>NTDB_id=880400 RJW51_RS09570 WP_024391262.1 1882695..1883498(+) (vicX) [Streptococcus parasuis strain 1628469]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDVESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=880400 RJW51_RS09570 WP_024391262.1 1882695..1883498(+) (vicX) [Streptococcus parasuis strain 1628469]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGAGACTTGGATGTTGAGTCATTTGGTGTCAGTCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAGGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTCAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTGCGTTCGGGGTCCTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAAGAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCGCAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768