Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RJW51_RS02940 Genome accession   NZ_CP134491
Coordinates   580674..581264 (-) Length   196 a.a.
NCBI ID   WP_024391946.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 575674..586264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS02915 (RJW51_02900) - 576054..576818 (-) 765 WP_105126595.1 ABC transporter ATP-binding protein -
  RJW51_RS02920 (RJW51_02905) - 576818..577765 (-) 948 WP_172006462.1 branched-chain amino acid ABC transporter permease -
  RJW51_RS02925 (RJW51_02910) - 577768..578655 (-) 888 WP_024391943.1 branched-chain amino acid ABC transporter permease -
  RJW51_RS02930 (RJW51_02915) - 578936..580105 (-) 1170 WP_172089817.1 ABC transporter substrate-binding protein -
  RJW51_RS02935 (RJW51_02920) - 580270..580557 (-) 288 WP_172089816.1 DUF2129 domain-containing protein -
  RJW51_RS02940 (RJW51_02925) clpP 580674..581264 (-) 591 WP_024391946.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RJW51_RS02945 (RJW51_02930) upp 581531..582160 (-) 630 WP_024391947.1 uracil phosphoribosyltransferase -
  RJW51_RS02950 (RJW51_02935) - 582240..583856 (-) 1617 WP_172089815.1 alpha,alpha-phosphotrehalase -
  RJW51_RS02955 (RJW51_02940) gtfA 583929..585377 (-) 1449 WP_012027490.1 sucrose phosphorylase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21557.75 Da        Isoelectric Point: 5.7110

>NTDB_id=880358 RJW51_RS02940 WP_024391946.1 580674..581264(-) (clpP) [Streptococcus parasuis strain 1628469]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKTK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=880358 RJW51_RS02940 WP_024391946.1 580674..581264(-) (clpP) [Streptococcus parasuis strain 1628469]
ATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTCACGTTTGCTGAAAGACCGCAT
CATTATGTTGACAGGCCAGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGCTTTTCCTAGATGCACAAGATC
CAACAAAAGATATTTATCTCTATGTAAATACACCAGGGGGTTCTGTTTCTGCAGGTCTTGCCATCGTGGATACAATGAAC
TTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAATCATTGCTTCAAGTGGTACAAA
AGGCAAACGTTTCATGCTTCCTAATGCAGAATACATGATTCATCAACCAATGGGCGGAACAGGTGGTGGTACGCAGCAAA
CTGACATGGCAATTGCAGCAGAACACCTCTTAAAAACTCGTAACAAGTTAGAAAAAATCTTGGCGGATAATTCAGGTAAG
ACAGTCAAACAAATCCATAAGGATGCAGAGCGTGACTATTGGATGTCTGCTGAAGAAACCTTGGCATACGGCTTTATCGA
CCAAATTATGGATAATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

92.347

100

0.923
  clpP Streptococcus pyogenes JRS4

92.347

100

0.923
  clpP Streptococcus mutans UA159

89.286

100

0.893
  clpP Streptococcus thermophilus LMD-9

88.776

100

0.888
  clpP Streptococcus thermophilus LMG 18311

88.776

100

0.888
  clpP Streptococcus pneumoniae Rx1

89.583

97.959

0.878
  clpP Streptococcus pneumoniae D39

89.583

97.959

0.878
  clpP Streptococcus pneumoniae R6

89.583

97.959

0.878
  clpP Streptococcus pneumoniae TIGR4

89.583

97.959

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.184

100

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

83.673

100

0.837
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571