Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RJW51_RS02130 Genome accession   NZ_CP134491
Coordinates   425421..426263 (-) Length   280 a.a.
NCBI ID   WP_172090153.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 420421..431263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS02105 (RJW51_02095) - 420741..421556 (-) 816 WP_397610492.1 replication initiator protein A -
  RJW51_RS02110 (RJW51_02100) - 421559..421726 (-) 168 WP_032499127.1 hypothetical protein -
  RJW51_RS02115 (RJW51_02105) rplL 421927..422289 (-) 363 WP_024392290.1 50S ribosomal protein L7/L12 -
  RJW51_RS02120 (RJW51_02110) rplJ 422357..422854 (-) 498 WP_024392291.1 50S ribosomal protein L10 -
  RJW51_RS02125 (RJW51_02115) topA 423235..425328 (-) 2094 WP_172090154.1 type I DNA topoisomerase -
  RJW51_RS02130 (RJW51_02120) dprA 425421..426263 (-) 843 WP_172090153.1 DNA-processing protein DprA Machinery gene
  RJW51_RS02135 (RJW51_02125) - 426515..427072 (-) 558 WP_172075210.1 sugar O-acetyltransferase -
  RJW51_RS02140 (RJW51_02130) - 427083..427343 (-) 261 WP_024404257.1 metal-sensitive transcriptional regulator -
  RJW51_RS02145 (RJW51_02135) - 427453..427788 (+) 336 WP_172090152.1 rhodanese-like domain-containing protein -
  RJW51_RS02150 (RJW51_02140) - 427785..429440 (+) 1656 WP_172090151.1 FAD-dependent oxidoreductase -
  RJW51_RS02155 (RJW51_02145) - 429548..430099 (+) 552 WP_172090150.1 DUF1836 domain-containing protein -
  RJW51_RS02160 (RJW51_02150) - 430089..430739 (+) 651 WP_024397131.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31387.28 Da        Isoelectric Point: 8.8494

>NTDB_id=880353 RJW51_RS02130 WP_172090153.1 425421..426263(-) (dprA) [Streptococcus parasuis strain 1628469]
MNNFELFKWKKAGLSNLNINKVLAYQKKQGKKLTLRNVAVVSECKNPILFMENYKNLDTKACREEFNKYPSFSILDDIYP
TALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASENGIQSVQKIIKELNNRFVIVSGMARGIDTAAHIASLKNGGQTI
AVIGTGLDKVYPKENKELQHYIGKHHLVLTEYEPNAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIVDGKSDGCHHLIQEGAKCITSGLDILSDYRF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=880353 RJW51_RS02130 WP_172090153.1 425421..426263(-) (dprA) [Streptococcus parasuis strain 1628469]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGCTTGTCCAATCTTAATATTAATAAAGTTTTGGCCTATCAAAA
AAAACAAGGTAAAAAATTAACTCTACGGAATGTCGCTGTTGTATCTGAATGTAAAAACCCAATTCTTTTCATGGAAAATT
ATAAGAATTTAGATACGAAAGCTTGCCGGGAGGAATTTAATAAGTATCCATCTTTTTCAATTTTGGATGATATTTATCCC
ACAGCTTTAAAACAAATTTATAATCCACCAGTTCTCTTATTTTATCAAGGTGATCTTGAATTACTCGAAAAATCAAAATT
GGCAGTGGTAGGTACGCGCAATGCCAGTGAAAATGGCATTCAATCTGTTCAGAAAATTATCAAAGAACTCAATAATCGCT
TTGTCATTGTGAGTGGTATGGCCAGGGGGATTGATACGGCAGCTCATATTGCGAGTTTGAAAAATGGCGGACAAACCATT
GCAGTGATTGGAACAGGATTAGATAAGGTATATCCTAAGGAAAACAAGGAGTTACAACACTATATTGGAAAACATCATTT
AGTGCTAACAGAGTATGAACCAAATGCCCAGCCTTTAAAATACCATTTCCCTGAGCGAAATCGCATTATTGCCGGATTGG
TTGAAGGTCTGGTAGTCTGTGAGGCAAAAATGCGGTCTGGTAGCTTGATTACTTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTTTATGCCATTCCTGGTTCTATTGTGGATGGAAAATCAGATGGCTGTCATCATTTGATACAGGAAGGAGCAAAGTG
CATTACATCAGGCTTGGACATCCTTTCGGACTACCGATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.571

100

0.686
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

62.143

100

0.621
  dprA/cilB/dalA Streptococcus pneumoniae D39

62.143

100

0.621
  dprA/cilB/dalA Streptococcus pneumoniae R6

62.143

100

0.621
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

62.143

100

0.621
  dprA/cilB/dalA Streptococcus mitis SK321

62.143

100

0.621
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

61.429

100

0.614
  dprA Lactococcus lactis subsp. cremoris KW2

58.571

100

0.586
  dprA Bacillus subtilis subsp. subtilis str. 168

43.841

98.571

0.432
  dprA Vibrio campbellii strain DS40M4

35.495

100

0.371
  dprA Acinetobacter baumannii strain A118

36.861

97.857

0.361
  dprA Acinetobacter baumannii D1279779

36.861

97.857

0.361