Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RIU93_RS05890 Genome accession   NZ_CP134464
Coordinates   1208584..1208901 (-) Length   105 a.a.
NCBI ID   WP_213463385.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 2023.05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203584..1213901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS05860 (RIU93_05860) gcvPA 1204163..1205512 (-) 1350 WP_311095409.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RIU93_RS05865 (RIU93_05865) gcvT 1205531..1206622 (-) 1092 WP_058710166.1 glycine cleavage system aminomethyltransferase GcvT -
  RIU93_RS05870 (RIU93_05870) - 1206794..1207312 (-) 519 WP_071561236.1 shikimate kinase -
  RIU93_RS05875 (RIU93_05875) - 1207471..1207845 (-) 375 WP_311095410.1 competence type IV pilus minor pilin ComGF -
  RIU93_RS05880 (RIU93_05880) - 1207886..1208119 (-) 234 WP_311095411.1 hypothetical protein -
  RIU93_RS05885 (RIU93_05885) comGD 1208166..1208606 (-) 441 WP_071561239.1 competence type IV pilus minor pilin ComGD Machinery gene
  RIU93_RS05890 (RIU93_05890) comGC 1208584..1208901 (-) 318 WP_213463385.1 competence type IV pilus major pilin ComGC Machinery gene
  RIU93_RS05895 (RIU93_05895) comGB 1208914..1209981 (-) 1068 WP_311095412.1 competence type IV pilus assembly protein ComGB -
  RIU93_RS05900 (RIU93_05900) comGA 1209953..1210927 (-) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  RIU93_RS05905 (RIU93_05905) - 1210974..1211597 (-) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  RIU93_RS05910 (RIU93_05910) - 1211601..1211924 (-) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  RIU93_RS05915 (RIU93_05915) - 1211924..1212910 (-) 987 WP_002465775.1 ROK family glucokinase -
  RIU93_RS05920 (RIU93_05920) - 1212907..1213110 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11754.79 Da        Isoelectric Point: 9.5430

>NTDB_id=880061 RIU93_RS05890 WP_213463385.1 1208584..1208901(-) (comGC) [Staphylococcus warneri strain 2023.05]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVSKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=880061 RIU93_RS05890 WP_213463385.1 1208584..1208901(-) (comGC) [Staphylococcus warneri strain 2023.05]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCTCCAAACAGACGGCACATATTCAATCAACTGGATGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

80.198

96.19

0.771
  comGC Staphylococcus aureus N315

80.198

96.19

0.771
  comYC Streptococcus gordonii str. Challis substr. CH1

43.434

94.286

0.41
  comYC Streptococcus suis isolate S10

51.25

76.19

0.39
  comGC/cglC Streptococcus pneumoniae TIGR4

42.553

89.524

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

42.553

89.524

0.381