Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RIU93_RS05900 Genome accession   NZ_CP134464
Coordinates   1209953..1210927 (-) Length   324 a.a.
NCBI ID   WP_002465784.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 2023.05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204953..1215927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS05865 (RIU93_05865) gcvT 1205531..1206622 (-) 1092 WP_058710166.1 glycine cleavage system aminomethyltransferase GcvT -
  RIU93_RS05870 (RIU93_05870) - 1206794..1207312 (-) 519 WP_071561236.1 shikimate kinase -
  RIU93_RS05875 (RIU93_05875) - 1207471..1207845 (-) 375 WP_311095410.1 competence type IV pilus minor pilin ComGF -
  RIU93_RS05880 (RIU93_05880) - 1207886..1208119 (-) 234 WP_311095411.1 hypothetical protein -
  RIU93_RS05885 (RIU93_05885) comGD 1208166..1208606 (-) 441 WP_071561239.1 competence type IV pilus minor pilin ComGD Machinery gene
  RIU93_RS05890 (RIU93_05890) comGC 1208584..1208901 (-) 318 WP_213463385.1 competence type IV pilus major pilin ComGC Machinery gene
  RIU93_RS05895 (RIU93_05895) comGB 1208914..1209981 (-) 1068 WP_311095412.1 competence type IV pilus assembly protein ComGB -
  RIU93_RS05900 (RIU93_05900) comGA 1209953..1210927 (-) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  RIU93_RS05905 (RIU93_05905) - 1210974..1211597 (-) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  RIU93_RS05910 (RIU93_05910) - 1211601..1211924 (-) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  RIU93_RS05915 (RIU93_05915) - 1211924..1212910 (-) 987 WP_002465775.1 ROK family glucokinase -
  RIU93_RS05920 (RIU93_05920) - 1212907..1213110 (-) 204 WP_002451885.1 YqgQ family protein -
  RIU93_RS05925 (RIU93_05925) - 1213100..1214554 (-) 1455 WP_107529357.1 rhomboid family intramembrane serine protease -
  RIU93_RS05930 (RIU93_05930) - 1214551..1215105 (-) 555 WP_311095413.1 5-formyltetrahydrofolate cyclo-ligase -
  RIU93_RS05935 (RIU93_05935) rpmG 1215337..1215486 (-) 150 WP_002451882.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37163.35 Da        Isoelectric Point: 9.2695

>NTDB_id=880062 RIU93_RS05900 WP_002465784.1 1209953..1210927(-) (comGA) [Staphylococcus warneri strain 2023.05]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=880062 RIU93_RS05900 WP_002465784.1 1209953..1210927(-) (comGA) [Staphylococcus warneri strain 2023.05]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAACAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCGTTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGTCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

74.383

100

0.744
  comGA Staphylococcus aureus N315

74.383

100

0.744