Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RIU93_RS05885 Genome accession   NZ_CP134464
Coordinates   1208166..1208606 (-) Length   146 a.a.
NCBI ID   WP_071561239.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 2023.05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203166..1213606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS05860 (RIU93_05860) gcvPA 1204163..1205512 (-) 1350 WP_311095409.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RIU93_RS05865 (RIU93_05865) gcvT 1205531..1206622 (-) 1092 WP_058710166.1 glycine cleavage system aminomethyltransferase GcvT -
  RIU93_RS05870 (RIU93_05870) - 1206794..1207312 (-) 519 WP_071561236.1 shikimate kinase -
  RIU93_RS05875 (RIU93_05875) - 1207471..1207845 (-) 375 WP_311095410.1 competence type IV pilus minor pilin ComGF -
  RIU93_RS05880 (RIU93_05880) - 1207886..1208119 (-) 234 WP_311095411.1 hypothetical protein -
  RIU93_RS05885 (RIU93_05885) comGD 1208166..1208606 (-) 441 WP_071561239.1 competence type IV pilus minor pilin ComGD Machinery gene
  RIU93_RS05890 (RIU93_05890) comGC 1208584..1208901 (-) 318 WP_213463385.1 competence type IV pilus major pilin ComGC Machinery gene
  RIU93_RS05895 (RIU93_05895) comGB 1208914..1209981 (-) 1068 WP_311095412.1 competence type IV pilus assembly protein ComGB -
  RIU93_RS05900 (RIU93_05900) comGA 1209953..1210927 (-) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  RIU93_RS05905 (RIU93_05905) - 1210974..1211597 (-) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  RIU93_RS05910 (RIU93_05910) - 1211601..1211924 (-) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  RIU93_RS05915 (RIU93_05915) - 1211924..1212910 (-) 987 WP_002465775.1 ROK family glucokinase -
  RIU93_RS05920 (RIU93_05920) - 1212907..1213110 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17001.31 Da        Isoelectric Point: 10.6205

>NTDB_id=880060 RIU93_RS05885 WP_071561239.1 1208166..1208606(-) (comGD) [Staphylococcus warneri strain 2023.05]
MAKRLQIKAYNYIEMLMVLFILSILLLCTLSSKNLLTISKSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEENGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=880060 RIU93_RS05885 WP_071561239.1 1208166..1208606(-) (comGD) [Staphylococcus warneri strain 2023.05]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATGTTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACAATATCAAAATCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAAAATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAACGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

49.664

100

0.507
  comGD Staphylococcus aureus N315

49.664

100

0.507